MmuINT0172717 @ mm10
Intron Retention
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109515988-109519501:+
Coord C1 exon
chr3:109515988-109516083
Coord A exon
chr3:109516084-109519432
Coord C2 exon
chr3:109519433-109519501
Length
3349 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
AACCCGTCTCTTCCAAATAGGAG
3' ss Score
8.91
Exon sequences
Seq C1 exon
GAATGTTCAAAAAGAGCCAATAACGGGAAGTTTACTCTGCGCGATTTGCTGGTCGTTCCAATGCAGCGCGTGCTGAAGTATCACCTCCTCCTTCAG
Seq A exon
GTCTGTACATTAACAGCGCAAATGCTACCATGCATTTGCTCACCCCACAGAACACCGACGGGCGGCAGCCTCATGCAGAGTCTCCATATTATAATTAGAGCTAAGTGTGAAATGGCCAGGACAGCTAGGTGTTTTATTTTCCTTTTAGCAAAAATAAATAAATAAAAAACAAATAAATAAAATAATTCTGTCTTTACTAAGAAGACATTTTGTGTTCTTCATAAAGGATAGGAAAAAAAAAAAAACTAATGAATGAAACAGATACTAGTAAAAACGTGCCTTCTATGGCATGTTTTGGAGTTAGCGATAATCATTCGCTAGCGAGTCAATGAACCTGAGTGTGCTCAGATTACCCTCATTAGACTGTCCGCCTTATCACAATAATTAAGAGAATATTGTATCATGGGCTGTATTGCTTTTTCAGTGCACGAGATGTACTAAGACGGCATCTATTGTGAGGGGATGCTTACTATAACACACAAAGTTTATGGTTTCCACGGTTAGTCCTCTAATGAGGGTGGAGAGTCTTATAAATTTAATTTGATAGCTATACCAGGAGGCTCATTAGTTCTGCTCCAAAGAAATGTCTCATTGTATTAGTCTGCGAACCCGGCTGATGCTTGTGGAATGTCATTTTAAAAAGATCTACTACCTGTACGTGAAATAGAATTTTGAGTCTTCTGTGCTTCGTACATCTTGTATATTAAATTTCTTGAACTGTAGCCATGCAATTATTCGTCATTTCTATTTTGGTTCTACTGAGAAATCAGAAAAATTCAAACCCTGATTATTTCTTAAAAATGCATTAAAACATTCATGAGACCTAAACTCAAAGCAACTTAATCAAATTGGATTTTATGAAAAAATAATAAGGGGCAACTCAGGCAATCAGCTTTCAAGGCTTTGCGGAGCTAAAAACAGGTCCAAAATAAGATAATAATTTGTTTTGTTTCTTTGATGTCTTGAAGCACCGACTGAAGAATTTAGAAGGTTCAGATCAAGAGTCAGACTCTTTGGGTCCTTGTAAGATTTTGTGCAGACTCAAAAACTAAGAAATACAATGATGTGTTTTTGAACTCTTTCCTTACCCTGCTTCTCCCCCTTCTGTTGTTTTGTATTTTAGAGTTCAAGACTACGTGTAATTCTACAAAGTTTTTTTTTTTTTTTTTACAAATTAGGAAGCTCTATTTTTGGTACTATATGTGGATAAAAATTTTAGAGATTTTTTTTTAACTTTTAACATATTTTGGAGCACTTGTCTGGTGTCTCGAGATATCAGTTTGTAATTTTTCTCCTTACTAGTGCACTTGCATGCTTTCTAATGGAAATCCCTTCCGATGCTGGCTCATCTGAGGACAATGACATAAAATTTAAAATATTTCTGACAAGCAGTGAGCCTGCATGGGTCTGACCTAGGCCCTCTGTGTGATGTTTCAGTAGTATAGATTGTGGGACTCCAACAGTGGCATTGGGAAGTCTCTGACTCCTGCTTGCCTTGGGGACTTTGTCCCCCCTACTGGGTTGGCTCAACCAGCCTAAATACAAGGGGAGGCGCCTAGTCTTACTGTAACTTGATAGGCCTTGTTTGTCTGATATCCATGGGGTGGGGGCTGACCTTTTCTGAGGAGAAAAGAAGTGGATGGGGTCTGGGGTGTGGTTTGTGGGTTGTGCTGAGGCATTGGGAGGAGAGAAGGGAGGAGAAACTGTAGTCAGGATGTAATGTGTGAGAGAATAAATTTAAAAATTAAAGTGTTTTATAGAGAAAGTTTTAAAAACTTTAAAAGTAACTTACTAGTTTGTTTAACAAAGTGAGAATAAAAATCAAATTTTGGTGGAGTTTAATATTTGGCAGTTTCTTCTTTTTGCAAGTCCTGTTAATAAGAGGAAACAGTGTCAGGGCTGGGGCCTTTAAAGAATTTTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTATACACATCAAACTGTGTTAGGAAGGCATTGTATGACAATGCTCACCATTGACATTTAACACAATGTGGTGGGTACACAGAAGACACACAAAGGCCTCAATAACTACACCTCAATTTGCTGGATACCGGACTAGAGGCTTCATTTTCTCTTCTTAGAGGGGTGATTTGTGAAATGGGCTTTAAAGGGCTACCATGAGTTTGCCAGGTGAACAAGAGGAGGAACTTTCTAAAATCAATCGATCAATCATTCAATCAATCAATCAATCAATCATGTTATGGGTTACATACAAATGCCTTGGAGAACTATAGATTATTTAAGTGTGGATAGAAAGTAGGTAGGGTGGAAGTTGAAAAAAAGGGATTAAGAGACATTTGCAGAGTCTAGATCCAGAGCAGGACTGCCAGGAGGTACTGGGTTACAGCTGACACATTGGGGACTTTAGAGAAACCTAACCAGGCTACAGACAAGATATGACTTAGGAGTTTAGAAACCTGCTCGCTATCAGGAGCATGGACAGATAGCTAGAAAGAGAGACTCTAGGTCCAAAGTGTAGTTGGAAACACTTAAGAATAACCGTTCGAAAAATGGCAAGGAGCTGCTGGTGCTAGACAACCACCAGGATCATGCTCTCCAGGGCTGGATCAATAATATCAGCAAGGCATGGGGAAGAGAAGGGAGGGCAGAGCCTGAGACACCATTCAGGTTCCGGCTTTAGCTGTTACACCAATGGAAATGCTGCCATTTAATTAAGCACCACCAGTCACCACCTCGTTCTGGGTGAGGATGGAGTATGTTTGAGACATTAAATTTAGGGGGCCTGTGAGACTATTATTTAGTTGGACATATGAGTCTGCTATTGGGTGTGATATCTGGGTTGAACAGATATACTGCAGAGTGATGGCCTCATTAGGTGACATCTGATGTGACAGTGGTTGTGATTTGGAGACTATGCAAAATAATAATAAAAGGGTGATCATGTGGGCGAGGGCAACCCTCTAAAGAGAAAGGAAGCTATGGGAGACGGAAGAGTATGAAGAAAATTAGGATTTATAAGCAAAATAGTAACCGCAGTAACTCACAAACATCCTCTTGCTCTTGAAATGGAGACGTGGGATTAGGGTAAACAGTCTTAGAGAAGCGGTGAGTGAGAGGGAATAGAAAGTATCCCTTCATCTAGAGCCGAGGCCGTCAGCATGATATCCAGGAAACAGCATGCTTATAATGGTGAGGGTAGTTCAGCTGAACAAAAAAGGAGTCCCCCAACATGAAAATTATCACCCTGTGGAGACTGATAGTAGTGTCTTTAAAAGGTTTGACTCATTTGTTGCATCAGTGTTAGTTTTGGATTTAGGGCGAGCATTGCTAACCCGTCTCTTCCAAATAG
Seq C2 exon
GAGCTGGTAAAACACACCCATGACCCTATGGAGAAGGCGAACCTGAAGCTGGCTCTGGATGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721:ENSMUST00000046864:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(17.7=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types