MmuINT0173556 @ mm9
Intron Retention
Gene
ENSMUSG00000059280 | Vpreb2
Description
pre-B lymphocyte gene 2 [Source:MGI Symbol;Acc:MGI:98937]
Coordinates
chr16:17980658-17981173:+
Coord C1 exon
chr16:17980658-17980703
Coord A exon
chr16:17980704-17980790
Coord C2 exon
chr16:17980791-17981173
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACATGCTTCTATCTTCTCAGGTT
3' ss Score
9.85
Exon sequences
Seq C1 exon
ATGGCCTGGACGTCTGTCCTGCTCATGCTGCTGGCCCACCTCACAG
Seq A exon
GTAAGGGAACTCTTGGGGTCCAGGGCTTCCTTGCTCCTCCTGTGGCCTTGCTCTGCCCCAGTGATGGACATGCTTCTATCTTCTCAG
Seq C2 exon
GTTGTGGCCCTCAGCCCATGGTGCATCAGCCACCATCAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACATTGGCATTTACAGCATTTACTGGTACCAGCAGAGGCCGGGCCACCCTCCCAGGTTCCTGCTGAGATACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGGCCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCAGCCTGAGGACGAGGCTGTGTATTACTGCGCTGTGGGGCTCCGGAGCCACGAAAAGAAGAGAATGGAGAGAGAGTGGGAAGGAGAAAAGTCGTATACAGATTTGGGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059280-Vpreb2:NM_016983:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=WD(100=89.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCTGTCCTGCTCATGC
R:
GGCCTCTGCTGGTACCAGTAA
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: