MmuINT0175906 @ mm10
Intron Retention
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59862620-59862857:-
Coord C1 exon
chr2:59862817-59862857
Coord A exon
chr2:59862727-59862816
Coord C2 exon
chr2:59862620-59862726
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCCATCTGTCTATTACGTAGGTA
3' ss Score
7.12
Exon sequences
Seq C1 exon
GGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACCAG
Seq A exon
GTCAGAAGTGAATCTCACTGTGTTTACTGTGTTTACTAACAAATTAGCCAGACTCTGTGTAACGGCTGCATCCATCTGTCTATTACGTAG
Seq C2 exon
GTATGTTACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCAATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988:ENSMUST00000028368:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.2=78.6)
A:
NA
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCAGAGTGTGCTACA
R:
GGCAAGGTGTTTCCAGGTCAA
Band lengths:
145-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types