RnoINT0165481 @ rn6
Intron Retention
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45935376-45935603:-
Coord C1 exon
chr3:45935563-45935603
Coord A exon
chr3:45935483-45935562
Coord C2 exon
chr3:45935376-45935482
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CAGCTGTCTCTGTCACCTAGGTA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GGAACTCAGAGTGTGCTGCACACGCTGACTCAGCATACCAG
Seq A exon
GTCAGAAGTGAATCTCACATTGTTTTACTGTGATTAGCAAAGGTGCCAGATGCTGTGTAACAGCTGTCTCTGTCACCTAG
Seq C2 exon
GTACGTCACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCGATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990:ENSRNOT00000008168:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.2=78.6)
A:
NA
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCAGAGTGTGCTGCA
R:
GGCAAGGTGTTTCCAGGTCAA
Band lengths:
145-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]