MmuINT0177501 @ mm9
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137915583-137916844:-
Coord C1 exon
chr5:137916792-137916844
Coord A exon
chr5:137915730-137916791
Coord C2 exon
chr5:137915583-137915729
Length
1062 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
CAGAGACTCTTTCTTCCCAGCCA
3' ss Score
3.3
Exon sequences
Seq C1 exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq A exon
GTGAGTTGGAACCAGACCTGCTCAGGCCTCCTTCCCCTCCTTACAACCTGCTCTAACCGTGAACTCTCCTCCTGTCCTAGTACAGGGCTCGTAGTCAGGGGACAGCAATCACATAAACATGGGATACATACGCCAAGGGCAGTTCCTGAACTGAAGGGTGGAGGGAACAGTGGGAAAACTGGGCCTAACTCCACCTGTAAGATCCCTGTTCAAATTAATTATGACAATCACTGCATATGATGACACAGGCTTGCCAAGCCAGCACTGGGAAGCCAAAGCAGGATCACAAGGTCCTGGTTAGCCAGGGTTACATAGCAGCATTTTGAGCACATTGTCTCAAAATAACAAAACAGTAGGCTTGGGTATTGTTGTGCACACCTGTAATCCCAGCTCTCAGGAGGCTGAGGCAGGAGGATGTGGAGTTCAAGGCCACCTTGGGCTGCATGAGAACATGAGGCAGGGGTGCTGGGAGATAACTCAGTAGCCTCCTTGCTGCACAAGCTTAAGGACCCTAAGGACCCGAGCTCCATCTCTAGCATCCATGTAAAGAGCTTGCAGTGGTAGGTGCTGTAGTTCCAGCACTGTAGAGGCACACACAGGAGGATCTCTAGGGTTCCTTGGCCAGCCAGGATAGTTGAATCGGCGAATCCTGTCTCAAAACATAAAGTGGAGAGAAATGGAGGAAGACATCTGATATTGACCTCTAACTTCTACATGCATGCACATCTGCACACACACACACACACATGCATGCACACACCAAGATAACAGTAACTGCCACGACTAAACACATTGCTACCAAGACAAAGCCTGTCTGTCTGAATCAGCCTGGACCTTAGTTTGTGCTCCCCAACTTTGTCATCTACTCTCTCTACTCTCCAGCTTTGCCTCCCTCCCCCCCCAGTTCTGTGTCTCCCACATCTCTGCTCTGGATCTGAGCTCTTAGTGGCAGCCTTCTCCATACTTAGTGACCCTGCTGACCCCCACCTCCCAGTGTGGCTCTGTGACCTAACCCTTGCCCTCTGCCCTTTCTGAGGCCTCACAGAGACTCTTTCTTCCCAG
Seq C2 exon
CCATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTGCAGATGATGGGGACTGGATTCGGACTACTGGACCCTCCCTGACGGGCACTTCTGGCCCCCCTGGGGGGTACCCCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-Zan:NM_011741:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(26.8=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: