MmuINT0177501 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137474355-137475616:-
Coord C1 exon
chr5:137475564-137475616
Coord A exon
chr5:137474502-137475563
Coord C2 exon
chr5:137474355-137474501
Length
1062 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
CAGAGACTCTTTCTTCCCAGCCA
3' ss Score
3.3
Exon sequences
Seq C1 exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq A exon
GTGAGTTGGAACCAGACCTGCTCAGGCCTCCTTCCCCTCCTTACAACCTGCTCTAACCGTGAACTCTCCTCCTGTCCTAGTACAGGGCTCGTAGTCAGGGGACAGCAATCACATAAACATGGGATACATACGCCAAGGGCAGTTCCTGAACTGAAGGGTGGAGGGAACAGTGGGAAAACTGGGCCTAACTCCACCTGTAAGATCCCTGTTCAAATTAATTATGACAATCACTGCATATGATGACACAGGCTTGCCAAGCCAGCACTGGGAAGCCAAAGCAGGATCACAAGGTCCTGGTTAGCCAGGGTTACATAGCAGCATTTTGAGCACATTGTCTCAAAATAACAAAACAGTAGGCTTGGGTATTGTTGTGCACACCTGTAATCCCAGCTCTCAGGAGGCTGAGGCAGGAGGATGTGGAGTTCAAGGCCACCTTGGGCTGCATGAGAACATGAGGCAGGGGTGCTGGGAGATAACTCAGTAGCCTCCTTGCTGCACAAGCTTAAGGACCCTAAGGACCCGAGCTCCATCTCTAGCATCCATGTAAAGAGCTTGCAGTGGTAGGTGCTGTAGTTCCAGCACTGTAGAGGCACACACAGGAGGATCTCTAGGGTTCCTTGGCCAGCCAGGATAGTTGAATCGGCGAATCCTGTCTCAAAACATAAAGTGGAGAGAAATGGAGGAAGACATCTGATATTGACCTCTAACTTCTACATGCATGCACATCTGCACACACACACACACACATGCATGCACACACCAAGATAACAGTAACTGCCACGACTAAACACATTGCTACCAAGACAAAGCCTGTCTGTCTGAATCAGCCTGGACCTTAGTTTGTGCTCCCCAACTTTGTCATCTACTCTCTCTACTCTCCAGCTTTGCCTCCCTCCCCCCCCAGTTCTGTGTCTCCCACATCTCTGCTCTGGATCTGAGCTCTTAGTGGCAGCCTTCTCCATACTTAGTGACCCTGCTGACCCCCACCTCCCAGTGTGGCTCTGTGACCTAACCCTTGCCCTCTGCCCTTTCTGAGGCCTCACAGAGACTCTTTCTTCCCAG
Seq C2 exon
CCATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTGCAGATGATGGGGACTGGATTCGGACTACTGGACCCTCCCTGACGGGCACTTCTGGCCCCCCTGGGGGGTACCCCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(26.8=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types