MmuEX6021784 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137465918-137475616:-
Coord C1 exon
chr5:137475564-137475616
Coord A exon
chr5:137474355-137474501
Coord C2 exon
chr5:137465918-137466002
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGAGACTCTTTCTTCCCAGCCA
3' ss Score
3.3
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq A exon
CCATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTGCAGATGATGGGGACTGGATTCGGACTACTGGACCCTCCCTGACGGGCACTTCTGGCCCCCCTGGGGGGTACCCCAATGGAG
Seq C2 exon
TTGTTTATTGAGGCCACCCGGGGCACCAGCACTGCCTTTGTTGTCGCTCTGAACTTCATCTTGATCTCTCATGGACCATGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'1-5,'1-4,5-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(26.8=88.0)
C2:
PF0062918=MAM=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCGAACTCTCCAGACCT
R:
CCCGACATGGTCCATGAGAGA
Band lengths:
138-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types