MmuEX6021784 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137915168-137916844:-
Coord C1 exon
chr5:137916792-137916844
Coord A exon
chr5:137915583-137915729
Coord C2 exon
chr5:137915168-137915439
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGAGACTCTTTCTTCCCAGCCA
3' ss Score
3.3
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq A exon
CCATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTGCAGATGATGGGGACTGGATTCGGACTACTGGACCCTCCCTGACGGGCACTTCTGGCCCCCCTGGGGGGTACCCCAATGGAG
Seq C2 exon
AGGGGTATTACCTGCACATGGATCCCAAGACCTTCCCTCAGGGCGGAGTGGCACGCCTGCGTAGCCCTGACATATGGGAGCAAGGCCCCCTTTGCGTCCATTTTGCTTTCCACATGTTCGGGCTGTCATGGGGCGCCCAGCTCAGACTGCTGCTGCTCAGGGGCCGGAAGCACCTCCGGCCCTATGTACTCTGGAAACATGTGAACACCCAGAGTCCCTCTTGGATGCCCACCACTGTCACTGTACCAGCAGATCATGATATACCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.300 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(26.8=88.0)
C2:
PF0062918=MAM=FE(54.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGAACTCTCCAGACCTG
R:
TTCCAGAGTACATAGGGCCGG
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: