HsaEX7004313 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100735720-100737080:+
Coord C1 exon
chr7:100735720-100735772
Coord A exon
chr7:100736483-100736629
Coord C2 exon
chr7:100736809-100737080
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGTGACCCATTCTTCCTAGATG
3' ss Score
7.15
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAAAGAGAAGCCTCCGGACCAGAAGCTGGTTGTTCGCAGCTCTAGGGACAACT
Seq A exon
ATGTCCTCACCCAGTGTGATTTTGAGGATGACGCCAAACCCCTCTGTGACTGGTCCCAAGTGTCCGCAGACGATGAAGACTGGGTTCGAGCCAGTGGGCCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCCTAACGGAG
Seq C2 exon
AGGGCAGCTATCTGCATATGGAATCGAACAGCTTCCACCGTGGGGGAGTGGCCCGCCTGCTCAGCCCCGACCTATGGGAGCAAGGCCCCCTCTGTGTGCACTTTGCCCACCACATGTTCGGGCTGTCTTGGGGCGCCCAGCTCAGGCTGCTGCTGCTCTCGGGTGAAGAGGGCCGCCGCCCCGATGTGCTCTGGAAACACTGGAACACCCAGAGACCCTCCTGGATGCTCACCACCGTCACTGTGCCCGCAGGGTTCACCCTGCCCACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.480 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(26.8=88.0)
C2:
PF0062918=MAM=FE(54.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCAGCTCTAGGGACAAC
R:
GAGCATCCAGGAGGGTCTCTG
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains