MmuEX6021783 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137465918-137476589:-
Coord C1 exon
chr5:137476382-137476589
Coord A exon
chr5:137475564-137475616
Coord C2 exon
chr5:137465918-137466002
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCTCCAAACCAATCCCAAGGAG
3' ss Score
1.23
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGACTTCTCAAATTCTGTGATTTTTTTTTAATGGCCTCCTCAGAAGGGTGACAAGAGAGGAGGGCCAGGTGTTTATAAAGTGGCCTGGGATCCTCATTGTAATCTTCTCCACCTGAGGGCCACCTCCGAGGTCCCTCATGGCTCTGCCAGTTTGGACCCTGATGCTGCTGGTGGGGGCTGCCTGGGGCCAGGAACAAGTGCCTGCGTG
Seq A exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq C2 exon
TTGTTTATTGAGGCCACCCGGGGCACCAGCACTGCCTTTGTTGTCGCTCTGAACTTCATCTTGATCTCTCATGGACCATGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'3-4,'3-2,4-4=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.632 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTTGGACCCTGATGCTG
R:
CCCGACATGGTCCATGAGAGA
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types