MmuEX6021783 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137915583-137917817:-
Coord C1 exon
chr5:137917610-137917817
Coord A exon
chr5:137916792-137916844
Coord C2 exon
chr5:137915583-137915729
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCTCCAAACCAATCCCAAGGAG
3' ss Score
1.23
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGACTTCTCAAATTCTGTGATTTTTTTTTAATGGCCTCCTCAGAAGGGTGACAAGAGAGGAGGGCCAGGTGTTTATAAAGTGGCCTGGGATCCTCATTGTAATCTTCTCCACCTGAGGGCCACCTCCGAGGTCCCTCATGGCTCTGCCAGTTTGGACCCTGATGCTGCTGGTGGGGGCTGCCTGGGGCCAGGAACAAGTGCCTGCGTG
Seq A exon
GAGACCGAACTCTCCAGACCTGGGGCCGATGGTGCACACTTCGAGGGAGGATT
Seq C2 exon
CCATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTGCAGATGATGGGGACTGGATTCGGACTACTGGACCCTCCCTGACGGGCACTTCTGGCCCCCCTGGGGGGTACCCCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.632 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(26.8=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTTGGACCCTGATGCTG
R:
ATCCAGTCCCCATCATCTGCA
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: