HsaEX7004314 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100734027-100736629:+
Coord C1 exon
chr7:100734027-100734221
Coord A exon
chr7:100735720-100735772
Coord C2 exon
chr7:100736483-100736629
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCTTCAAACGACCCCCAAGGAA
3' ss Score
2.13
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AGCTTTTCTGTGTTTCTCTGTTCATTCTTCATGGCATCCTTGGAAGGATGCCAAGCTAAGGAGGCCAGGGGGGAATAAAAGGAGTCCAGGCTCCCAACTGTGCCCTTCCCCTCTCCCCTGGGAGCAACCACTTAGGGTCCTCATGGTTCCTCCAGTCTGGACTCTGCTGCTTCTGGTGGGGGCTGCCCTTTTCAG
Seq A exon
GAAAGAGAAGCCTCCGGACCAGAAGCTGGTTGTTCGCAGCTCTAGGGACAACT
Seq C2 exon
ATGTCCTCACCCAGTGTGATTTTGAGGATGACGCCAAACCCCTCTGTGACTGGTCCCAAGTGTCCGCAGACGATGAAGACTGGGTTCGAGCCAGTGGGCCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCCTAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(26.8=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCTCCAGTCTGGACTC
R:
CAGTCTTCATCGTCTGCGGAC
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains