MmuINT0178534 @ mm9
Intron Retention
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:114182286-114190104:+
Coord C1 exon
chr8:114182286-114182341
Coord A exon
chr8:114182342-114189977
Coord C2 exon
chr8:114189978-114190104
Length
7636 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAGGAACTGTGTCATTTCAGGGA
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
GTGAGTTGTCTGCATAGTACTCATTTGGTGTTTCATTTCACTCTTGGAATGTTATATTTATAGAAAATGAACCAGAAAGCATAATGAGTTAGATCAGGGCTAGAAAGCCCTTCCTGTACCTTAATGTGGATCATAGTGGGGTTTGCCCCACACCAGTGCTATGAAGGGCAGAGACAGGAGGATTGCTGAAGCTTTCTAGAGTCTTAACTCCATGGTCAGTGAGAACCCCATCTGCCCTTGACATTCCGGGGAGGACCTCATGTTTTAAGGGGCGGCAGAGGCTCTTGAGGGACATTGTTTTAGTATCTGTACCTTAGATAATCACTGATCATTGCTGTTACATTATATAATAAAGAAAATAAGGAAGGAAACAAAAACACATTCTTAACAAGATATGGCAGAAACACTCAAGTCAATCAAAATCTCTTCTGTAGCTGGTCATGGAGGCCTTAGCTGGTATTTAGCACTGTTTTCCTCCACTCTCAGCCAGCAGGCCGCGGCTCTCTTCCTGGAGGAGTGACTCATGCTTCCATTCCTGAGGGGAATGTCCCTCTGTCATCCTGCCTGCCTTAGGTTGGGGTAGTTTCCCACGGACTTTCATCACAGGACATGGTAGCAACAAGAGAGGCTCTAAAGGACCTCCTACACTCCAGATAAAATCTTTCTTACCTCCACTGAGGAGGAGCAATACAATTTCCTCTTGGTAATCTGGATAAGTCACCTCTCTTAACTCTTCTTTCATAGTCTGCTGGCTTCGGGGCATCAGAAGCCTTAAGGAGGAAGTCTGCGCTTCAGTCGAGTGAGATGTTTGTTGTGTCTCATTGCTAGAGAACTTCCCCCAACTGGAACCAAAACTTCTACACCAGCAGAACTTAAGGTCATAGGAACAGGAAGCAAAAAAATTCCTAGTGGGTCACTGGGGTGACAGTAAGTGGAACTATTCCATTTTCCACTCCTTGATTCCTGGACCTATGGATCTTGGCTTTGGGAAAAAACCTAGCATATATTGGACACTGATTCAAAGACAGAATCAGACACTGATTCAAAGCATACACTCTCTTTAGGAGAGCCCTGCCCTAGCCCTCCATGCTGCTGCTACCTAATTGGCACTATAACTGTGTCTCCAAAGGCCATTCCATCTTTCTATCAGGCCAGCTGCTTCAGGATGGTGGGGAACATGGTAAGACCAGTAGATTCCAAGTCATGGGCCCATTGTCATGCTTCTTTGGCTGTGAAGTGAGTTCCTTAGAAACAATACTGTGTGGAATACCACGATGGTGGATAAGGCATTCTCCACAGATGGTGGTTTTGACAAAAGCCTTATGTGCAGGAAAGGGTACATCTATAACCAGAATAAGTATCAATTCAAAGCATTGTCCTTTTCACAGAGGAAGTGGTTCAGTGTAATCAGTCTGTCACCAGGTCACTGGCTGGTCACCCCAGGTAATTGTACCATATCTTGGGCTCCGTATATTGGTCTCTGCTGTTGGCTGTGCTCAGCAGCAGCTGTAGCCAGGTCAGCCTTGATGAGTGAAGTCCGTGGTGAGGTATGCACCATAGCCACTTTGTTCATGTGCCCTTAGGGGAATGACAGGGTTGGCTGGGGAAAGAGGCTGACTGTCCACAGCACAGGTCATCCTATCTGCTTGGTTACTGAATGCCTCCTCTGCTGAAGTCACCTTTTGATGGGCATTTACATAGAACACAAAAATCTTCACACCCTTTACCCATTTGGAGAGGTCAGTCCACATTCTTCTTTCCCAGTGTTTTTTTCTCACCATCTCTTCAACCATGCTCTTTCCAAGTCCCTGACCATCCAGCCAATCTATTGGATACAGCCCATGAATCAGTGAACATGGCCATTTTTCTTCCCAAACAAAATCTATGATGGCATGTACTGCCTGACGTTGTGCCTACTGTGACAATTTGCCTTCACTGGTGTCTTTCAGGGTTGTCCCAGAGGGGGTCGTAATGCTGCAGCTGTCCACTTCTGGGTGGTGCCTGCATAAGGTGCAGATCCATCAGTAAACCAGGCCCTAGTCTTCTCTTCAAACCAATCACAGGGCACATGACATGAGACTATAGGCGCATGCCTGGCAGTAGATAGTATTGTAATGAGAGTAGAAACCATAGACATTTGGAGAACTTCATGTACCTTGTTTGTGCCTTCAGGACCTGCTCAGGCCTGATCGTGTGTAGACCACTTCCATTTGATAGTGGATTGCTGCTGTGCCTGCCCTACTATGGCACAGTGGGGCAGATAACACCCAGCTCATGATAGACAGCAGCTCAGGGCGCATGGTAACTTGGTATCCCTTTGTCAGATGTTCAGTTTTCACTAAGGCCAATTGCAGACCAACAGCTGTCTCTCAAAAGAATAGTTGTCTGCAGATAATGGTAGGTAGAGCCTTGCTCCAAAATCCCAAATGTTTCTCCTGTGATTCACCTACAGGGGCCTGCCAGAGGCTCCAGACAGCATCCCTGTCTGCCACTGACAACTCATATACCATCAGGTCTGCTGGGTCATATGGTCCAAGTGGTAGGGCAGCCTGGAACTGTTGAAGAGCCTTGTGTTCCAGGCCCCACACAAAGCTCGCAGCTTTCTGAGTCACCCGATACATGAGTGGGAATAATCACCCAAGTGAGGAGTGTGCTGTCTACAGGATCCAAATAGACCCTCTAAGCCCTGTGCTGCCTCTTGGTGGTGGGAGGGGCCGCTGCGTAATGCATCCCTAACCTTAGAACCGATGTCTCTGCTGGCCTCGCACCCCTAGACTCTCAAGAATTTCACTGAGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTTAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCTTGTCTCAAAAACAAACAAACAAACAAGAATTTCACTGAGGTAGAAGGCCCTTGGATTATAGTTTATTTTCCATCTCTGATGTATGTATGTATTACCAACAAGTCTGAAGTGGTTGCTACCTTCTGTTCACTCTGTCTAATCAGCATGTCCTCAATATGGTGAACCGATATTTTGTGAAATTGATGATCAAGATCCAATTGAAAGCTTCAGGCAGGCATGGTGGCACATCTAATCTCCGTGCTTTGGAGGCAGCTGGGTGTGAGTTTGAGGCCAGCCTGGTTTCCAGAGCAAATTGCAGGACAGTCAGGCTGTACAGAGAAACCTCTGACTCGGGTGCTGGAAATTCAGCTGAAAAGAAATTGTTTTTGGTGATCTTATGGACAGGTACTAGGAAAAGGGGCATTTAATAGACCAATAATTGCAAACCGTGTGCTAGGAGATGTGTTAATCTGCTCAGGGACACCACCCCTGCCTGCATCCTTCAAGTCCTTAATGGCGGCACACATTTCTGCAATTCCTTCAGGATGTGCTACTGTTTTTGATTTACTATTTTCCCTGACCGAGGCAACTCTAAAGGCTTCCAGTTAGCCTTTCCAACAGTAATAGCTCTCATTCCACAGGTCAGGGAACCAGTGTGAGAATTCTGCCAACTTCTAAGTATATGCACCCCAGTTATACATTCTGGGACTGGGGAAATAACCAGAGGATGAGTTTGGGGACCCAGTTGGACTTCAACCAAAACTCCATGAATCATCTGACCTCCATAAGCTCTAACTTTAATTGGAGGACAACAATGTTTTTGGGGTTCCCGCAATCAGCAAGAATCAGTATCCACCAATAGACCCAGATAATCTGATTGCTTCCTTTCCCCCACTGTACAGTTCCCCTTGTAAAAGGCCATAGGTCCCTCTGGGGAACGACTGGAGAAAGGCTAAGAGTAACATTTTTAGGCATTTTATTAAGATCCTTCATCCATGGACTTCTGGGTCTGCAAACTGGCTCAAGTATGGGAATCAGTTCACAGGCAGAGATCCCCTTTTGCCATGATCCAGTGTAGCCTTTCTTTTATTTGTTAAGAGATTTTCCATTTGTACAGCTGCTTTAAAAAAAGAAAAAAGAAAAAAGAATGCAGTAGGCTTCTTACCATTTCATGCCAGAAGTACCATGGTTGATTAACCAGCACCAAAGGTCCATGAGAGTTATGCCATTATAAAATTCACCACAGATTAGACCTATATGGACATTGCTTTGCCTGTGCTTCCCATTATAACTACAGTCATCTTGTCTTTGGTGACTCAGTGCTGCCACCTGCTGCTTCTGCTTGGGGGCCTGATTAGACTCAGGCCTGGTCAACTTGCATTCAATTCATCCAACTGAGCAGCAACATCCCCAACCCTAAGGCCTGGCGCAAGGAAAGGGGCAACAACAAAGCTTATCAAATGTGCTGGTGCCCCTCTTGCCATTTTGCATCTTATGGGATTAGTGAAGGACATTCGTGATTAACTGAGTTACCAATAATGCGTTGATATCACACTAAAAAAAAGCACGTCCCCTTGGAGTTATGTCGCCAGAGTGAGTGCAGGTGGGGTTCTCTCGGCCTGCCTGTCCCTGTGTGTGTGTAGAGTCTGTATGTGCAATATGTGTCTTATGTGTGGGAGTGGTCTGTCCCTAGCAAAGGGTTTGCTCTGTCTCTATTGGGCAGCCCAGAAAGCACTACATGGCAGTGGGGAACTTTACTGAAATCTAAGTTTTACAAGGGATTCAGTCCCTGAATTGAGCTGACTCCAGCTGACAGATAACACATTAACTAGAGATTATGATTATTTAACATTATGGTGGGTTTTAGGGAGTATTTGCTGCTTTCGGCAGATGGTACACATGCATTGCCCTGGGTCGGGGCATTTAAAATACATAAGATTAGAGCTGTGCATTAGCTCAGGTTGTAAAAGTTGATGACTTAGTACACCCAAGGCATCTAATGTTTGTTATCACATTGTTCTCTTAAAGGCAGGCTAAAGTTCGAGGGTACAGTAACATTGACAGTCTTAAATTTTAAGGGACCTTAAAATATATTAGCTGTGAAGTTCCAGTCTCTTAGAATGTAAGATATTCTCAGAATATTGCATTGCCATGTGTCCTGGTGTATTGGAGCCCAGAAGAGGGTATCTGATTCCCTGGGACTGGGGTTACAGTGGTCAGTTGCCAAGTGGGTTCTGAGAATCCAGCTGGGGTCCTGTGAAAGAGTAGCCAGTGCTCTTAACCACTGAGCCATCTCTCAGCTCTGTCAGATAAGTGTTTTTCAAAGATGTTCTTAGTCTGTACTGTATTTTGGGGGTTTTTTTGGTTGTTTTTTGATTACTCAGGGGGTTAACTTTGGTTTTGTTTTTTGGGTTTGTTTGTATGTTTGTTTCTAGACAGGGTTTCTCTATGTAGCCCTGGCTATCATGGAATTCTCTACTCTCATAGACCAGGCTGGCTGCGAACTCAAGATCCTCCTACCTCTGCCTCTCTTGTGCTGGGATTAAAGATGTGCACCACCACCTGGCTGGGTTTGTTTTGTTTAGTAGTATTGTGGAGGTGAGGGGGAGAGAATCCTGCTGTATAGCTGGTGTTGACATGGAAACTGTGTAGTTGGGGCTTGCCTTGAAATCATGGTACTACCTCAGCTTCTCAAGTTCTGGGATTATAGGTGTGCACCAGCAGAGCAAATGACATCTTTTGGATTTATTAGAGCATAAAACTCTCTCATTCTCATTAATGTTGTAAGGGGCATGGTGTCCACACCCTTAGCCCAGCAGCTCAGGAAGCAGAGGCAGGTAGCCTCTGTAAATTCAGCTCCAGATAGTGCTACATAAGGAGACGGTCTTAAAACCCGTTTTGTGTGTGCTACGGCATCTGAGCCTTGACTTTCAGGAGTTGGTTCTTCCATCATGTGAGTTCCAGGGATTGAACCCAGGTCGTCAGCATTGATGACTGGCTTACCACCGAGTCAAGCTGCCAGCCCTCTTTCCTTATGCCTTGTGTAATAACAGTGTACACAGTAAAGTACTAGGGAGGGATATACTCTGCTAATAGTGTACTTGCCTTGCATCCTTGAGGCCTCGGGCTTGATCTCTAGTACCCCCACCCCAAACCCAGAAAAGAAACGGTCTGCAGTGTGAGCGCTTGTGCATACCTGGGTTAAGAAGCGGCTGCCAGCTCCCTGCGATGCCAGCTCAGTTGAGCCCTTCTTGGGGAGTTGGGTTTTCTTAAGTTACATTTTAAAAGTTTTGTGCACATGGTTGGGGGCTTAGGGGATGTGTGTCATAGTGTACTCCTGGAGGTCGGAGGACAACTTTCAAGGGTCAGTTTTCTCCACCACATGGTAAGGAACTCAGTCTTCAGGCTTGACAGTAAGCCCTTTTACCCAGGTAACTGTCTCATTGGCCCTTTGTGTTCAGATTGCATTAGCTGGTGGCAGTATAAGGGATAGTCTTACTGGCAGACAGCAATACTTACCTAAGCTGTGGCTCATAGTCTAGTTGTAGCTTTCCCGAAAGCTCACAGAACCCTCACTGAGAAAGTCACTGGCAAGGTCAGGATAGGAAGTACAGGGCTCAATGCTGCTGGTGTGTCAGGCCGGGTCAGAGTGTGCATCCAGTGCTCAGTGTTTGACAGCACTGTTTGATGAGGCAGATGCTCTCTATCTTCTGCTTCTGGCTCTACCACTTGACTGCCAGCTCTCGGGAGTTGGTTAAAAGCAGGCAGATCTGTTAGATGGATGGAGTATCCTTACCTGATCCAAGGCATCTTGGTGTAGAAGGAGGAGAGAAATGTCCTTAGTTAGCACATGTCCAGGACAGACCAGAGCAAGTACATGTAAGAATCCGCACATAGAGCCGGTCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGACGGATTTCTTAGTTCGAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGATCAGCCAGGACTATACAGAGAAGCTTTGTCTTGAAACCCCCCCCCCCAAAAAAAAAGCATCTGCACATAGGCTGAGTTAAAATCTGGTACAGTGGCATCGAAGATCTTGATGCTAGGCCTTAAAATGCCTGCTTTCAAATTCCTCCCAACCATACTAGACCAGCCTGGTGTCACTAGAGTAGCTGCTGTTTTGCAAACTCTGGACACTTCCCTCGGCTCTCCTTTTTTGAATTATTGTTTTATTGCTGCTTTTTCCTTTTTTTTTAAAGACTGGGTCATTTTATGGCAGTGGTTCTCAACCTATGGGTCTCAAACCCTTTTGTGGGTCACATACCAGGTACTTAGATTTTATAACAGTAGCAAAATTACAGTTGTGCCGTAGCAACAAAAAAACTATGGTTTGGGGTCACCACAACATTTTCCTTTGTCATTTGATGTAGGCCTCTGCATCAGTGTGGATTTGTCTCTTTCTAGCTTTTATTTTTGATCCCTGACTAGATTGAAATGTGTTATGTAGACCAGGCTGGCCTCAAACTCAGCTAGATCCCCCTGCCTTTACCTCCCAAGTGCTGGGGTTCAAGGTGTGTACTACCACACCTGTCCTGAGTAATGTCCTCACTGTTGAGAGCCGTGACAAACACCGGACAAGTAGCACAGTTGGGACTGTGAACATGGCCAGAGTAACTTTCCCTGTGCCCTTTCCATCTCCCAAAGCTAACCACTCTAGAAGGAACTGTGTCATTTCAG
Seq C2 exon
GGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835-Zfp1:NM_001037665:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: