MmuINT0178615 @ mm9
Intron Retention
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30830758-30836415:-
Coord C1 exon
chr7:30836364-30836415
Coord A exon
chr7:30830859-30836363
Coord C2 exon
chr7:30830758-30830858
Length
5505 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GACCTTTTTCCTCTTTCTAGTGC
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGGCCTCTGCGCAGCATCCTTCCGGCTGCTTAGCGCCGGTCCGCTCTGAGAG
Seq A exon
GTGAGTTGGTCCCTTGCACTGAGGAAATTGTCGCGGGGGCAGCGTAGGTTTGTCTTTAGTTGGCTTGAGAGACTTGGAGTCGGTGACGCTGAGTGGACACCGCGTACCCCGTTGCATCCTCCGTCTTCCCGCTGCAGAGCCCAGAGGCCCAGCATGGCTCTGAGTTCTGTGTGTGAACCTCAGAGTGAGGGCCCTCCGTACAAAAAGACAGCGCAGCTGCCACCGCAGGGCTGCTTTGTACGCGCTCCCTCCCCGCCAGGCAGCCCCGGTGGCCGTCGCCTGTCAAACCTGCCCCTCCGGTGGCGGCCAGTGTCCTCTCCATCCGCGGCGCTCCATTTCCAGTAGGTTATGTGTGTGGAAGGGCTGGTCGCGAGGGGTGTGTCCCCAGGCTACCAAGCCCGCACCTTCCCGGTTTGACCTTTTCCCCAGACTTGTTCATTTTAGGGAAGGCGAGGGAATAAAAGCAGGAAACGATTGTTGTTGCATACATAGAGACCCAACATTACTGCGGAAAAAAAAATAGCCTAACTTTCTTCTTTCTCGTTGTCCTATGAAGTGTACTCCTTGTTTTTCCAGGCATGGGGACATTTACTCCTCATTACTGTGAAAGTGAAAATGAAGTTAGCTTGGAAAGAAGCAGCGGTTTGGTGTTATCTTGGTCAGGGTAGAGGAGACAGATTCATGCAGACTGATAGTAAGCATCACTCAGAGATTATGTCTCTGATTAAATGCGGGTCCAGGCCCTCTTTGTGTGGTTACAAATGTCTTTTGTATTTTTTCTTTTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGTATACACATACCAGCAGAAGCCAGGAGAAGGTGTCTGATTCCCAGGAACTGGAGTTATAGACGGTCGTGAAACACCATGTGAGTACGGGGAATCACACTTGCATCCTCTGCTAGAGCAGCCACTGCTCCTAGCAGTACAGCTGTTTCCAGCCTCACAGGTTTTAAATTTTTAACATGTTCGTTTTTTACGTATGTGAGTGTTTCTGTCTGCTTTTCTTTCTGTGCACCACTGAGTGTGACTGCGCCTGAGGAGCCCTGAAGAGGGCATCGGATTCTCTGGAACTGGAGTTACAGCAGTCACGTAGGTGCTGAGAGTGTAACCCGCTGATCCATCTCTGCATTCCAGGCTGCAGCTTTCTTATCCACGAAGCCTGCTTTGCTAGTTCGTTTTTAATTACTGTGGAAGATTCCTTTGCTAAACCACGCTTCTTACCAGAATAGCACGTTTTGTTCTTGTTTTAAACAATTTGTACCTATACTGACCAGGAATTCACTGTAACCCATGTGATCTCAAATTTGTGGGTGATCCTCCTGCCTCAGCCTCCAGGCTGCAATGTGTGCCACTGTGCCCAGCCAGAATAACACTTAATCTTCAATCAATCTCTGTCTCTTTTAATCCCATTTTAGCAACAGCAGCCAGGTCTAAACCCCTAAATTACCAAGCTCTTCAAAGCCTTTTGCCCGGGGGCGGGGGTGGGGTGGGGTTGGGGGGCTGGCAGGGTACCTCACTGGTAGAGAGCTAGTCTAGCTTAGAGCAAGTGTGGGCTAGGCATGGGGAGCTTACAAAAGGGCCTTTTCACTTGTATCTCACCCATCACATTCTAGTTGCTCCTGCGCCCTTCCCATCCTCAGCGCATCAATCAAGATTTGGTAGGTAGCAGGACATCGACTTTTGCTCCAGTCCTGCTCCAAAAAAATCTCAAGCTTTCACAGTCAACGTGACCTCTTAACCTGGTGCTTTGGCCTTCTGCCTCTGTGAGGTTGGATTCTTCATGATTCCTCCTTTCTAGGAGTTAACTCGCACCAGGATCGAAAGGTGTTCAGTTTCTCTTGAGAGCTGCGTTTTTCCGATTGTGTTGAGATGGTCTACAAGTAAACCGTAAAGAGAAGCTAGCCATCCTTAGCACTGGCACAGCAGTATCTAGTTGGAACGGCCATGAAGTCAGCACAGCTGTTCAGCAAAGATGCAGCAAAGCTGAGCCACAAGCTGCGGATCAGCCGGGCAGTGGTGGCACACGCCTTTAGTCCCAGCACTTGGAGGGCAGAGGCAGGCGGATCTCTGAGTTTGAGGCCAGCCTGGTCTAAAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACAAACAAAAAAAACAAAACAAAAAAACAAACAAAAAAGGTAAACAAGATTCAGGGGGCTAGAGGAGTTGGCAGTAGATCAGATTACAAGCTTCTCCCTGCCATACACTCAGGCAATTAGGTAGCACAGAAGATCGGGGGGTGCTGCATATGGTCTGCAGTTGTCTCTGCCTTATACAGGGGCTTATACTGATGGACATAGAACCGTGTGGAAGGGGCTGGTGAGATGGCTCAGTAGGTAAGAGTACCCGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACAAGATCTGACTCCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTTAAAAAAAAAAAGAGCAGTGTGGAAAATGATAAAACATTGAGGTATCAGAACCCCCTTTAGAGAACTTAGCTTGTGTAGGGCTACTGTGGTATCATATGACCAAGGAACAAAAGTATACCAGGCTTACACATGTAAATACAATCTACAAAGATACAAAATATAAGTATTGTATTATGGCAGACATTGAATAATAGCTATAGCAGCTTTGGCCTGAGGATTTTTCTTGGGCCTAATGACAGTTACACTGCCCTGGACATGGCACTCTGCCTATGCTGGCTTGAAGCTTTTCTTTCTGTCTAGTACCCTGGAAACTTCAAGAGCTGCAAGCCTGAGAACGGTCTGTCATTTACCACATATGTTTGCTTTGGCAACATTAGAAATTGGGTTAGGGGTTGATGAGGGAAAGTGATGGTGAGAGATTACTCTGTCGTATTAAAGACGATCAAACATATGGCCCCAGACATGAGGGGGAAGCTAAACACATGTCCAGGAAAACATGATTTCCATCTCTTGGAAGAACATGAATCTGTCCCTGCCTACTGAGTTCTCTATAAACAAAGAAGGGCCCTGACAGTTGGTTAAAGCTGCAAGATTCTCCAGACCACTGCGCCTGACTCAACTCTTCCTCACCTACTCCCATCTCCTCTCTGGAACCTGTCAACTGGCAAGGCAGTCCCCAACCCAACACTCTCCCCACCCCAGCATCTGTCACCACCCCAACATTTGTGATAAGGATAGGACTTCACCCAAGGGCTTCATGAGCCTCCTGGGTAAGAGAGAGACCAGGAATTAGAGTTGGGTGAACAGAGAAGAACTATAAGAAGGTCATGGGCCATAACGAGTCTAAAGAAGGAAGACTCTTTATAGCTATAATACAACAGACCCTGGAGAAAGAAAGGGATCAGGGTTAGCACCTCTCAATTAATAATATTTTTGCAGTTTGTGCAGCAGTGTAGCCCTTGTTTCCCAGACCAAGGGACTTTGGATTTGAATTATTGGACTAGAGTGTGGAGAGAGATCCAAGTCTAGCATCAAGAATACAGACCTGAAACTGTGCCTGTTGAGAGTTTGTCTTACTGGGACTGATGAGGAAATAGACTTGGAAGAAGAGGCCTAAAAATATCACAATCCAGTTTGGCCTCCTTTAACCTCCAAGGCCACATCCCAACTTACCAAGCCTAAGAAGGGAAGACTATTGGTGCCTCTTCAGTGGGATGCAAAGGAGCTCTTGAGCAAGCCCATCAATTGTGAGAGCAGCTTGGATATTTTCCAGGTTTGTTTTTTTTTTAAAGATTTATTTATTTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTATATTTTCCAGTCTTAAATCATGAATGGAATGAGGAGCCCTCATGGGAGCCCCTGCCTTATAAACTCCTCAAGAAACTTAAACAGGCCACTGCAGGCGATGGCCCTACCTCTCTGACATGTTAAGGTGAGATTCTGATCCATGCTCTCCCAGAACATTGACTAAAGAAGTGAGACAAACCCTACAATTAATACAATGGAGATAGCTAACCAACAGCTAGAGAGAATCATTTATACGCAGCCTCGGAGCCTGGTAATAGTATCACATGTCTACTGGATGTCTCTAGCAGAGTGGGCCACTTGAATAGGTCCCTTTCCCAGTTACAGCTAAGAAAGGTATAGCCTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCCGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACTTTACATATAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAGAAAGAAAGGTATAGCCTCAGAGCTTTCTTAGATCGCTTCTCTGGTTTTTAAGAACTTAGAGCAAAGAGAATTTTGGGTGTCTAGTATTGTAATACTCCACAATGTAGAACAATTAAGTCATCTTCTTACACATGTGACTCATGGAATATAAGTTTGATTAATTTTACAGGACAAATATTATATCAGCTCTCCTCTCACCGCCTTTTACAACTCCTAAAATTAAGCCAGGTGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCCAGGGCCATACAGAGAAACCCTGTCTCGAAAAAACAAAACAAAACAAAAAACAAAACAAACAAAAAACCCAACAACTCTTAAAATTACATCCCATAACTTTTCCTCCAAGAGTATCAGAGGAACCCTTCCTTGCCTCAGCCGGCTGCTTTGGTTTTTACAGATGGGTCCTCTAATGGAACAGCTATAAAAACAGTAAATCAAAAGGGCCACTCATGGGCGACTCAGGAAACCTCAGTTTAGGGTGGTGGTAGGCGCTGTAACTGGGTCTTCTCTCATCTGGTGAATGAAGACTTGAACTTATGTTCTAGCCGGCAGTATATCCTCGGACTGCTCCCACAAATCGAAACAGCTACTTTGCTCTCTGGGCAAACCGCACTTTTACAAACATAAGATTTAATTTGCAGAGGAAACCACAGGCTGCCTCCCTCCCAGAGAGCTACCTGCCTCTTCCTCCTGGGTGATGCCTCACCCAGCATCGCATGGGTTGTCATTGATCTCAGCTGCCCTGGGCTCCCAGCAGGAAAGACAAAGAGGGGTTTGCTTGGTAGCAGTGGTAGCAGGGTCTTTCACATAGGACCTTTTTCCTCTTTCTAG
Seq C2 exon
TGCTGGGGTTCGAACTCAGGCCTTTATGTGTTGAGGCCAGCCCTCTCCCTCTGAGCCTTGTCTCCAGGAGTCTTCTGCTTTGGAGCCTCACGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985-Zfp14:NM_178733:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: