MmuINT0178718 @ mm9
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50724252-50725903:-
Coord C1 exon
chr11:50725782-50725903
Coord A exon
chr11:50724379-50725781
Coord C2 exon
chr11:50724252-50724378
Length
1403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGAGAATTTTGTATTTTCAGGAG
3' ss Score
3.72
Exon sequences
Seq C1 exon
GAGTCTCTCATGTCTTCCTTGCCGTCCCTCAGCTCCGCCCCTAGAGACTGCACATTTTCTAAGAAGGCCCCCCAGGAAGGAGGAAGGCAATGGCTGTTAGGCCTCTGCCATTGGCAGCTCAG
Seq A exon
GTGAGACATCATTGTCAGACATCTTTTACTCCCACAATGAGAATGGACTTGATTACAGAGGACAGAGATGTGTCAGAGTATTGGGTCCCTTCGCTGTCCCTCACCTGTGTTCCCAGCTGCTACTGGAGTTCTTGAATGGCACTCAAAGGCTAGAGAGGGGACCAAGGTCACAGGAGAGGTGGATGGGTGCTTCTAGAGCATATGGACCATCAGGAGTCAGAAAAGCCTAGGAAAGGGACGGTCAGAGCTATGAGAAGGAGGAAGTGTCCACCCATCTCACGGTCTGGGAAAGGATGCCACAGAGGATTTGCTGTAATGCAGGTACATGTTTCAATATGGAGTCTGTCTTAGCAGTTGTGTCATGTCGCTCCTCCATGGTGGTGATTGAGAGTCTGCCATGTACACAGCATGGTTAAGTCTTACAGCACTGGCTTCTGTTTAGCTATGATGAAGACTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGATGTACATGCCCATGTTTGCAGAAGCCAGAAGAGGTCACAGATATTTTCCTCTATCACTTCATGATATTTCTATGTTTAGACAAGGTCTCTCACTGAACTAGAAGCTCATCATTCAAGCTGTGTTAGCTGACCAGTAACGTGTGAGTCCTTTTATCTGAGTCTTCAGGATCTTAACTCAGCTCTGCTTGTTTGCTTTGCTCCCTCTTAGCTACTGCTCCATCTTCCCCAGTCTTCCTACAATCTCTTAAACATTGCCACAGGGGGACCAAGCTTCTAACACTTGAGCCTTTGGGGTCAAACCCAGGACAAACTTATGTGTACCTTGGTTCCCTATCCTTGGTTCCTGAGATAGTCAGTGTTAATTGTCACCTTAACAGAATCTGGAATCACCTGGGAGATGGGCTTTTGGGATGCCATCTTGATCTGGTTGAAGTAAGAAGATCCTCCCATGGTGGGTGGCACCATTCCCTAGGCAGGACCCTGGGCTGTGCGAGGAGAAAGAGAGCTGAGCAGTAGGCATTCATCCCCTCTCTGCTTCCAAAAATGTGAATGTCATGTGACCAGCTGCTGCCACCTTGTCTTTTGCAGCATGATGGTCTGCACCCCTGAACGGTGAGCCAAAATAAGTCCTTTCTCCTTTAAGTTGTTTTTGTCAGAGTATTTTGTCATAGAAACAGGAAAGGAAACTACCACAGCTCTCAAACCACTCTGTGTTATTTTCTCCTCAGGCTCATAATGGCTGTGGTTTGTTACACATATTTTGCTTTTGTCAGAATGTAGCCTATACCTTCATTCTTCTGGTCCTGCTTGGTCTCTCCTCAAGGAGAATTTTGTATTTTCAG
Seq C2 exon
GAGTTACTGACATACAAAGATGTGTCTGAGGACTTCACTTGGGAGGAGTCAATGCAGCTATATTCTGCACAGAGGAACCTGAATGGCAGAGTGATGCTGGAGAACTGTAGCACCCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321-Zfp2:NM_001044700:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTCTTCCTTGCCGTCC
R:
GGAGACCAGGGTGCTACAGTT
Band lengths:
239-1642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: