MmuINT0178739 @ mm9
Intron Retention
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47870567-47876895:+
Coord C1 exon
chr6:47870567-47870748
Coord A exon
chr6:47870749-47876505
Coord C2 exon
chr6:47876506-47876895
Length
5757 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TTGTCTCCTCAATCCTACAGCAC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCTCTTCTTGGGGGTGGGGAGCGCTCCCAGAATGCACCTTGTATCAACACGGCGGCGGCGGCGGCGGCGGCGGCTTCCAGGAGGGTGAGGACGTCTGGCGGAGCGGCGTACAGTTCGAGCAGTATCCCGCCAGTCGGTGTTGTGGGGCGACTGCGACCATGGCGGAGTCGACGCCTACTCGG
Seq A exon
GTAAGGTGCTCCGGCCGGCTCGGGAGGGCCTTGGGGGAGACAGCGCCCTGCCCGGGGCGGGGCTTGAGGCGCTCGGTCGCAGGCTTGGTTTCCTCCGCGGCCGTTGGCGCCGGCGGATGCTGACTTCCCTCCCGGTACCCTCGCCCTCCGCCCGCCCGCCCGCTCGCTTGCTCCCTGGGTCCTTCTGCGTCAGGCTCAGAGCCCGGATGCTCTGCGTCTTTCCGCAGAAACTTCTGCGAGGCTTTTTGAATTGTTTGTGACTGCGCCCACATATTTTCCTGCTTCGTGCCAACTAGGGACTCGTTTTCTGAGTTGGAGTGAAGGCGCGGGATAAAACCCTGGGTTTGGGTTGTTGCCTTTGAGCTCAGCTACGGAAGACCCCAGGACTTAGGGCTTCTCTCCGACCAGTGGGGCTCTGCTCCGGTTGCCATGTTCTGCCATAGCTATCTGTACTGAGTTTGCAGCCACAGGTTGAAGCCTTCTCTCCTTGGGGACTGGTGTATTTGCTGTTTTTGTTTGTTTGCTTGCTTGTTTTTTGTTTTGTTTTGTTTTTACAAAACTGTGGGTGCGCATTGTTATCCGCTTACCGCCTCTTCCAGCTGTCTCTCTTTTCAGAGAATGTGAAGACACTGAAAATTGGTTTGAGGAATATCTTCCGTAACTCAGCGTTCATCTATCTATATATTCAGTGCATGGTCTTCGGAAGGCAGTCTATGCTCACTTCTCTAGGCCTTTGTCTCCTTAACTTGAATTGAGAATGTTGAGTTCCTTGTAAGCATTTTTACGTTTTTTTTTTTCTGGCTCCAGTCTCCTCATACTGTGTCACAGTAGAGGTTAACATAGGAAAATAGGATAGATGGACCTGAACTGGCTTTTCACTGTTGAGACAGAGCCTCACAGGCTGTCCTTAAGCTGATGACAATCTTCCCGACTCAGCCTCCCCAGTGCTAAGTTTACAGGTGTAAGTCATTCTGCTGGGGTTTGTTTGGTAGTGGTTGTGCTTTGAGGCAAACTCTCATGTGCCCCAGCCTAGCCTATCTGAGAATGACTGTAAACTCCTACCTCTGACTCCCAACTTGCAGATATTACAGGCATAAGTATTTTTCTTGTCTTTTTGTTTTGTTTAGTTTTTGTTTTTTAATCTTTCAAAATAAGGTCTTACTTTGTGCCCTGGCTGCCTGGAACCAGTTAGGTAGACCAGGCTGGCTCTGAACTTGGAGCAATCCTACTTGTGCATCCAGGTGTAAATAAGAGACCAGGAGTTAAACAGACCCCCTGCAGGGTAAGCAGATAGGGAGAGAGGCCTTGGCTAGGCAGACAGATTTCCAAGATGGACATTATCTTCCTGATGCTCCTGACTTGAGGCAAGACTGGCAGCTTAAAGCAAAGGCTTTTTAGTCTTTTGTCTCCCACCAGCAGGTCCCCTGCTGATGGACTAGCTCTACAAGTTCATGGCCTATTGCACAACAACTATGAGCAATCAGCCATCTTCACCTGAACAGCTCTAAATTAGAGGATGAAGCTCCAGCCTCCCAGATCTGGTAGCTTCCTGAGTTCCCCCTCCCCTGCTTTGCAGAATATCTTTTTCTCTGTCTGCTGCATATGTGTTTCCTCACTCCCAGGAAACACTTTTCTTCAACTGTGGATTCTGTCAGTAGTGTTTGAGATTTTTTTTTTTTTTTTTTTGATGGTACCTGGGGGGCTTGAGTTTTTCCCGCCTTTTAATTCTTTAACTGGCAGAGAAAACAAACACTGTCCAGACCCCTAGAAGTGTCTCATTTCCAGACTCCTGGACAGTACCAGTGGGCGGCCTATCGTTGTGCATCTTGGCTTTTTGGGTCCAGAAATACTTTGGGAATCCTGAGATCTTTTCGTGAAAAAGAGATGCAGTAAAATTTGTGTTGAGAGTTTTGCCTTGATTGAAATTCACTATGCTTATTCTAGGAAGTGGGTAAGAACTAATTAGAATGGATGGACTGGAGGATTTTCTGTGTTTCTTCTCAAGGAGTTACCACTTCACAGAAAACATGACTCTGGTGCTTATGGTGTTTCTGCACCTGGCTCCCTTGAGACCCAGATGCAGCCTGTAAAATAAGTGTTTTCTCTAGGTAGGTTCCTATTAGCACTAAAGTGAAGTGAGAAAGCCAACCCACTCCTTTCCTGGCCGTGCCCAGCCTAGTGATCACCAACAGAGCTCACTGAGAGGAAGCAGGAAAGGTCCACCAAGATCTCAGACTACACTTGAACTTAATCGTCCTGACATTGTAGAATTTATTTCAACTGTTTTTGAACATATTTTGAAAATATTTGTATTCTCACACATCTCTTCTGTTGAAGATTCTGTTTTGCTTGGCCACATACATGTCCTGGTAATAACAACTAAAAATAAAAAAATAAAAAATACTGAGAAAAGCTGTGTAAATAATATTTGAAATTTATAGTAAATCATAAACCCATCATTTTATGCAACAGTTCAAAAGTAGTATAAACAATACTTAAAAACCCAAAAAACAGAAAGTGGGAACTCTTAAAATATGAACAGAGGCTGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGCGTGAGTTCCAGGATAGCTAGGGCTATACAGAGAAACCCTGTCTCGAAGAAGAAAAAAATAAGTCCTTTGAAAGATTTCATAAACATCAAATGTGATTGTTAAACAAATGTTCTCAAAGTTGGCTTCACAACTCTCTTCATTTCTTGGGTTCCTTTTGGTTTTGGTTTTTTGAGACAGGGTTTCTCTTATAGAGAAACTGTAAGAATGAGTCAGGGCTTCACTACATAACTCTGGCTGTCCAGGAATTCAATATGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTTCCTGGCTCTGCCTCCCAAGTGCTAGGATTAAATGCCTGGTTGAATAGGACAGTAATTTGTTGAGTTAATGACAAGTAATTAAACTACATGACAGCATTGATGTAGAAGCTCAGGAGAAGAGATTGGAGTTAAGAAGTCTAGTGGCCTTTGTACATATACTTTTTATAATTTCTAGGATGATTGCTAAAGACTAGAAAGTCAGTTACAATAAATATAATTGAGTTAAAAGGCAAAGATTGCCAGGACAGGAAAAATCCAGCCTTCTGGCTTATAGTAAATACAGCAAAAGATGTCTATGCAAATGCTGAACTATAAAAGGATATGAGAACAATTGTCAAAACAATACAATTAAAAGAAGCTTGGCTAAGAAGTGTATTGTAGCTAGAGGTCCAATGTATTTCTCTACTTATAATGGAAAAAGATTCAGTTCTCCATCTTGAAATGACATCTTTAAACTAGTTTGAGGCTAATTACATAGCTTCAGGTAGATTTAAAAATTGACAATCAAAACTCATTATTATAGAATATTCAAATATAGCATTTATTTAGCAGAAAAAGACTTTAGTGTCTTTTTCTGGGTATTATTGTTCGCCCATTAGAACCCATGGAGAGGACCGAGATATTCTGCCTCATTCGTTGTAGTTGTCCCTAATTACAAGGACTGTCAAGGCTTGAAATGAAGCTAGTATGAACAACTAACTGAGTTTTAATTTAGCTAGTCATGATGGCTGTGTCTTTAATCCCAGAATTTGGGAGGCAGAACAGATGGATCACTCTGAGTTCAAGATCTGTCTGCTCTATATTGTGTGTTCCAGGACAGCTACAGATGTATAGCAAGACCTTGTCTCAAAAAAGAAAAGGGAAAACCTTCCCCAAAATGGGACTGGGGTAGTGAGCTGGGGAAAGGCTATGCTCAAAATCCTTTATTAATACTTTATCCGTTTTCTAGTAGCAGATATCTATATATAATGATACAGTATAGATTAAAAAAAAACATTACATTTTTGATAGATTGATACAGAGGAAGAGCTGTCTGGAATAGGAAACTAGAGGATGTGTTAAAATGTTGAGCATACTTTAAAATTCCTTCCAATGCAATATCATACTCTGCGTGGGTCAACACATTTTATCCTAAAAATGTTATTTCTCAACTTTACCTGTGGAATTTGAAGCATTTCCAGACACAGTCTCTGGAGAGATTTTTGTGAAACTCATGTTTGTAGTATATCCGTGGGTCACTACTATAAAATAAAGATTTGTGTTAGCATCAATAACTACTATACAGCTATAGTTTAATAAGGTCATAATACTGGTAAAGTGACAGAAAATTTAACCCATAGAACAGGAAAACAAAAAACAAATCAGAAACAGGCTGATAGCAAAATTTGATTTATGGTTAAGAATAACACTACAGATTAGGGAGTAAATGTTGACTATTTACATTTATTGTTATTGGATTTTTTTGGAGACAGGGTCTTACTATATGTAGCCCTGGCTGGCCTGGGACTCACAATGTAGACCAGGGTGGGCCTAAACTCTCAGATCCACCTGCACTGTGATGAAAGGAATGTATTTTGTGTGTAATGCGTGTGTGTAGGTGTGAGCCGCCACACACTGGTGGTCAGATGGCAGCTTGTCGGAGCCAGTTCTCTGCTTCCTCCACATGGGGTTCAGGGATAGGGAATCCTAGGTCTTCAGGCTTGGCCTTTAACGGATGAGCAATCTTGCCAGCTTAAAATGGCTTAAAATTATTTTTTACATTGATCTGCTTGTGTTGTGTGAATGTGTGCAATGATATGTATATACACATGCATTTGGAGGTCACAACTTGAGGGAAAAGCTTATTTAACTCTGTGTGGAGGTATTTTGTCTATTTTTCTAATATTTTCAAAATTATTATAAAATATACATGTAACTTTTTCTTCCTTCCCATTCTCCACCCCACACTTTGTCTTTTGAAACAGAGTTTCATGTAGCCCATGTGTGGCCTTGAACTTGAAGTGCTGGGATTACAAGCATGCACTATGGTTTCTGTGGTGCTTTAGATAGGAGTCAGGGCTTTGCTTATGCTAGGTCAACATGATACCAACAGAGCTGCAATCCTAGCCACGCTTGGAATTTTCTGTCTTAGTTGGGTTTCTGTTGCTGCTATGAAAGTCCTTAAATGGCTGAAGAGATGGCTTAGTGATTAAGAGCACCGATTGCTCTTCCGAAGGGACTGAGTTCAAATCCCAGCAACCACATGGAAAAAAAAACAAAACTAAAGAAGGGAAAACTGAAAGTCCTTGAACAAAAAGCAAGTTGGAGAGAAAAGGGTTTATTTGGCTTATACTTCCATATCACTGTTCATCTTTGAATGAAGTCAGAACACAATCAAACAGGGCAGGAACCTGGAGACAGGAGCTGATGCAGAGGCTGTGGAGGGGTGCTGCTTACTGGCTTGTTCCTCAAGATGTAGTGGCTTGCTCAGCCTGCTTTTTTTTTTTTTTAAATAGAACCCAGAACCATCAGCCCAGGGATGGCATCACCTACAAAGAGCTGAGCCCTCCCCCATTAATCACTAATTAAGAAAATGCCCTAAAAGGCTGCCTATAACCCAGTCTTATGGAGGCATTTTCTTAATTGAAGCTCCCTCCTTTCCAGTAACTCTAGCTTGTGTCAAATTGACATAAAACTAACCAGTACACTGTCTGAATGAATAAAAAAGTACATTTGAGTATTTTTTTATTTGTTTGTTTAAAGAAAGCTAGATAGTTGTGAGTCTTAGGCTTTCTTTATTTGATGTTTGGAAATTTACCTTGTCTCACTGGCCTTGTCTCCTCAATCCTACAG
Seq C2 exon
CACAGGAGGAAACGGCGCGCCACGCCATTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCCGTACTTTCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCCGTGGAGAAGAAGATGGAATCACAGGCTGCCCGACTGCAGAGCCTGGAGGGGCGTGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGTCTGCCTCCCGGCAGCAAGGGGGAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-Zfp212:NM_001145881:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: