RnoINT0167857 @ rn6
Intron Retention
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77592016-77598549:+
Coord C1 exon
chr4:77592016-77592039
Coord A exon
chr4:77592040-77598159
Coord C2 exon
chr4:77598160-77598549
Length
6120 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TTGTATCCTCAATCCTACAGCAC
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATGGCGGAGTCGACGCCTGCTCGG
Seq A exon
GTAAGGGGCTCCGGCTGGCCCGGGAGGGCCTTAGGAAGACAGCGCCCTGCCCGGGGCGGGGCCTGAGGCGCTCGGTCGCGGGCTCGGTTTCCTCCGCGGCCGTTGGCGCCGGCGGATGCCGACTTTCCTCCCGGCTACGCTCGCCCTCCGTCCGCTCGCTCTCTGGGTCCTTCTGCGTCAGGCTCAGAGGCTGGGTACTCTGCGTCTTTCCGTAGAAACTTCTGCGAGGCTTTTTAAGTTGTTTGTGACTGTGCCCTCATATTTTCCTGCTTCGTGCCAACTAGGGACTCGTTTTCTGAGTTGGAATGATGGCGCGGGATAAAACCCTAGATTCCGGTTGTTGCCTTTGGGCTCAGCTGCTTAAGACCCCAGGAGTTATGGCTTCTCTCGGACCAGTGGGGTTCTGATCCGGGTGCCATGTTCTGCCATAGCTATCTGTACTGAGTTTGCAGCCACAGGTTGAAGCCAGGTGGGGCCTTCTCTCCTTGGGGACAGGTGTGTTTGCTGTTTTTGTTTGCTTGCTTTTTAAAAAATAACTGTAGGTGCACACTATTACCCTTCCCTTCTCTTCCAGCTGTCTCTATTCAGGGAATGTGAAGACACTGAAAATTGCTTTGAGGAGTATCTTCTATAACTCAGTGTTCATCTATTCAGTACATTGTCTTCGGAAGGAAGCTCCTGTGCTCAGCTCTCTAGGCCTTTGTCTCCTTAACTTGAATTGAGAATGTTGAGTTCCTTGTTAGAGCATTTCTACTTTTTTTTCTGGCTCCAGTCTCCTCATACTGTGTCACAGTCGAAATTAACATAGGAAAAGAGTAGGATGGATGGCCCTGAACTGGCTTTTTGTCATTGAGACAGCCTCACTCTGTAGCAGAGGCTGGCCTCAAGCTGGTGGCAATCTTCCCGACTCAGCCTCCCCAATGCTGCATTTACAGGCATGAGTCGTTATGCAGGGTTTTGTTTGGTGGGTTATTTTGTTTGTTTGTTGTTTTTTTTAAAGATATATAATAAATAAAAGTACACCGTAGCTGTCTTCAAACACACCAGAAGAGGGCATTAGATCTCATTACAGATGACTGTAAGATACCATGTGGTTGCTGAGACTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTTCGGCCCCTTGGGGCAGATTCTTAAGTGCCCCAGCCTAGCCTATCTGAGAATGACCTTAAACTCCTACCTCTGACTCCCAACTTGCAGAGATTACAGGCAATTTTTTTTGTCTATTTTTTTTAAAGATTCATTTATTTATTATATGAGTACACTGTCGCTGTCTTCAGACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTATGAACCACCATGTGATTGCTAGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTAACCCACTGAGACATCTCTCTAGACTGTCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATCTTTCAAAATAAGGTCTTGTTGTATAGTCCTGGCTACCTGGGACCAGTTTTGTAGACCAGGCTGGCTCTGAACTTGGAGCAATCCTGCTTCTGCATCACAGTGCTAATGAGAGACCAGGAGTTAGACATACTTTCCCCAGGGTAAGCAGATAGGGGAGGGGCCACGGGTAGGTAGGCAGATTTCAAAGATGGACATCTCTTCCTGATGCTCTTGACTTGAGTAAAGACTGGCAGCAAAGGCTTTGTCACCCACCAGCAGGTCCCCTGCTGATGGACTGGCCCAACCAGTTCACAGCCTATTGCAAAACAGTTCTGGGCCAGTCAGCCATCTTCAAACTGAACAGCCCTAAATTAGAGGATGAAGAGTCTTCAGAAGCTGTAAAGCCACAGCCCCCCAAATCTAGTAACTCCCCGAGTTGCCCTCTGCTTTGAAGAGCATCCTTTTCTCTGTGTCTGCTGCATATGTGTTTCCACACTACCAATAAACACTTTTCTTCAACTGTGGATCCTGTCAGTAGTGTTTGAGATCTCTTTGATGCTACCTGTGGGGCTTGGGTTTTTCCTGCCTTTTAATTTTTAGCTGGCAGAGAAAACGCACACTATCCAGACCCCTAGAGTGGCTCATTTCCAGACTCCTAGACTGTACCAGTACACCAATGTTATGCACTTTGGCTTTTTGGGTCCAGAAACACTTTGGGAACCCTGAGGTCTTTTTGTGGAAAAGAGATCTAATAAAATTAATGTTGAAAGTTTTGCATTGATTGAAATTCACTATGTTTTTTCTAGGAAGTGGGTTAGAACTAATTAGAATGAATGGACTGAAAGATTTATCGGTGTTTATTTTCAAGGAGTTACCACTTAACAGAAAACAGGACACTTGTGATTATGGTGTTCTGCATCTGACTCCCTTGAGACCCAGATGCAGTCTATAAAGTGTTTTCTCTAGGTAGATTAGTTTTAGCACAAAAGTGAGGTGAGAGGACCAACACACTCCATTCCTGGGTATTCCACTCTGAGTTATCACCAGCCGACCTCACTAAGAAGCAGCAATAAAGGTCAACCAAAATCTAAAAGTAAACTGGAACTTACAGTCTTGACATTGTAAGATTTATTTAAACTGTTCTTGAACATACTTTGAATATATTTGTATTCTCACACATCTCTTCAGGTGAGGATTCTGTACTGCTAGGCCAGATACATGTCCTGATCATAACAATTAAAAATAAAAAATATTGAGAAAAACCATGTAAATAATATTTGAAATTTATAGTAAATCATAAGCCCATTATTTTGTGCAACAATCCAAAATAAGTAAAAGTAATACTTATGACTCAAAGACAGAAAGTGGGAACTCCTAAGATACGAACAGAGTTGGGAAGCCAACTTTGAGAGCATTTGTTGAACAATCACATTTAATGTTTATGAAATCAAGTGACTGTTTTTTTGAGTCAGAGCTTTACTACATAACTCTGGCTGTCCAGGAATTCAATATGTAGACCAGGCTGGCTTTGAACTCACAGAGATTGTCCTGGCTTTGCCTCCCAAGTGCTAAGATTAAATGCCTGGCTGAATAGAATAGTAATTTGTTGAAGTAATGACAGGTAATTAAACTATTTGTCAGCATTGATGTAGAAGCTAGGAAGAAGAGATCAGAATTCAGAAGTCTTGTGGCCTTTTAAATATACTTTTTATAATTTCTAGGATAATTGCTAAAGACTAAAGAGTCAGTTACAATAAATATAATTGAAGTAAAAGATAAAGACTGCCAGTACAGAAAAATCCGACCTTCTGGCTTATAGCAAATACAGCTAGAAGATGTCTATACATATGGTTAACTATAAAAGGACATGAGAACAATTTGTCAACAATACTAATTAAAAGTAACTAGGCTAAAAAATATATTGTTGCCAGAGATTGAATGCATTTCTTGGAAAAAGATTCAGTTCTCCATCTTGAAATGACATCTTTAAACTAATTTGAGGCTAATTACTTAGCTTTGGGTAGATTTAAAAAATGACAGTCAAAGCTCATTATAGAATATTCAAATATAATGTATTTTATTTAGTAGAAAAAAGTCATGAGTATTATTGCTCACCCATTAGAACCTGTGGAGAGGACAGAGATTTTCTGCCCCATTTGCTGCTGTTGTCCCTAGATACAAGGACTGTCAAGTCTTAAGATGTAGCTAGTATGAACAATAAAATGAGTTTTAATTAGATGAGCTAATCATGATGACTCTGCCTTTAGTCCCAGTATTTGGAAGGCAGAACAGATGAATCTCTGAGTTCAAGGCCTGTCTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCAACCATGTGGTTGGTGGGATTTGAACTCAGGATCTCTACTGGAAGAGCTGTCTAGCCCCCAAAGCCTGTCTGTTCTATATTGTGTGTTCCAGCATAGCCAGAGATGTATAGCAAGACTTTGCCTCAAAAAAGAGAAGGGAAAAATCTTCCCAAAAATAGGAATAGGGTAGTGAGCTGAAGAAAAGCATATGCTCAATGTTATTAATACCATATCCATTTTCTAGTAGCATATATCTATGTATATTGATAAAATATAGATTAAAAGAGAAAGAACTAAGGAAAGGGGCTGGAAAGATGGCTCAGTGGTTTAGGCCCTTCTTGCTCTTGCAGGGGACCCAGGTTGATTCCCAGCTGCGATGTGGTGACTTAAAAACCATCTGTAACTCCAGCTTTGGGATCTGATGCCCTCTTCTGGTCTGCATTGGTACTAGGCACACTATGTTAAAATGTTGAACGTGCTTTGTGTATGGGTCAAAACATTTTATCCTAAAAATGTTATTTCTCAAATTTATCTGTGGAATTTGACACATTTCCAAACGTCTCTGGAGATATTTTTGTGAAACTCATGTTTGTAGGATGTCTGTGGGTCAAAAGTCAAGGTACTACTATAAAATAAAGAGATCATCAGTAACTACTGTACAGCTAAGATTATATTGGTAAAGTGACAGAACAATTAACAAAAAGAAAAAAATGATGGAAACAGGCTGACAGCAAAATTTGGCTTATGGTAGAGAATGATATTACGGATTAGTGGGTAACTGTTGACTACTTTTTTTTTATTTCTTTTTTTTTTTTAATTTCTTTTTTTTTTTTTTTTAATTTCTTTTCTTTTTTTGGAGCTGGGGACCGAAACCAGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCAACTACTTATTTTTATTTATTATTATTGCACTTTCTGAGACAAGGTCTTACTCTATGTAGCTCTGGCTGGCCTGGGACGCACAATATAGACCAGGATGGGCATAAACTCAGAGATCCACCTGTGTTGTGATTAAAGGAATGTGCCAACATGCCTGACCCTGCTTTATTTATTTTGTGGTAATATATGTATGTAGGTGTGAGCCTGCCATCATACTCGTGTGGTCAGATGGCAGGTGGTAGGAGCCAGTTCTCTGCTTCCACCATGTGGGCTTCAGGGATCTTAGGTCCTCAGGTTTGGCCATTAGCTGATGAGCAATCTCACCAACTTAAAATGACTTAAAGCTGTTTTTTACATTTCTTTACTTACTTTGTGTGTATATGTGCATGGATATGTATGTACACATACATTTGGAGGTCAACAAATTGAGGAAAAAGCTTACTTAACTCTGTATGGTGGTATTTTGTCTATTTTTCTAATACTTTCAAAATTACTATAAAATATACATGTCTTCCTTCCCAGAAGTCCCCATCCCCCTTTTTCTTTTGAGACAGGGTTTCTTGTAGCCCACGCTTGGCCTTGAACTTTTGATCCAGCTGCCTCCATTTTGAGTGCTGGGATTATAAGCATGCACCATGGTTCATGGGGTGCTTTAGATAGAAGTCAGGGCTTTGTCCGTGCTAGGTGAGTATGATACCAACAGAGTTGCATACCCAGCCACACATGACATTTTCCGTCTTAGTTAGGGTTTCTATTGCTGTCCATGACCAAACGCAAGTTGGAGAGAAAAGGGTTTATTTGGCTTACACTTCCATGTCACTGTTCATCATTGAATGAAGTCAGGGTAGAATCAAACAGGGGAGAAACCTGGAGACAGGAGCTGGTAAAGAGGCTGTGGAGGGGTGGCTTGTTCCCGTCGTATACTGGCTTGCTCAGCCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAACCCAGAACCACTAGCCTAGGAATGGCATCACCCACAATGAGCTAAGCCCTCCCCCATCAATCACTATTAAGGAAATGTCCTACAGGCTTGCCTATAACCCAGTCTTATGGAGGCATTTTCTTAATTGAGGCTCCCTCCTTTCCAGTAGCTCTAGCTTGTTTCAAGTTGGCATAAAACTAACCAGCACACTGTCAGAATAAGTACATTTGGGTATGTTGTATGTTTTTGTTTGTTTTAAGAAAGCTAGGTAATTCTGAGTCTTTGACTTGGACTTGTTTTCTTTATTTGATATTTGGAAATGACCATGTCTCACTGGCCTTGTATCCTCAATCCTACAG
Seq C2 exon
CACAGGAGGAAAAGGCGCTCCACACCGTTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCAGTACTTCCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCTGTGGAGAAGAAGATGGAATCCCAGGCTGCCCGACTGCAGAGCCTGGAGGGACGCGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTACTGCAGGAGTACGGCCTGCTGCAGCGACGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGACTGCCCCCAGGCAGCAAGGGGGAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711:ENSRNOT00000009054:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.285
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]