MmuINT0178841 @ mm9

Intron Retention

Gene

ENSMUSG00000062040 | Zfp27

Description

zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]

Coordinates

chr7:30678356-30683897:-

Coord C1 exon

chr7:30683771-30683897

Coord A exon

chr7:30681446-30683770

Coord C2 exon

chr7:30678356-30681445

Length

2325 bp

Sequences

Splice sites

5' ss Seq

TGGGTAAGC

5' ss Score

8.84

3' ss Seq

TTTCTCATATTTCATTCTAGAAG

3' ss Score

8.61

Exon sequences

Seq C1 exon

GAATTAGTGTCCTTCATGGATGTGACTATAGATTTCAGCAGAGAGGAGTGGCAGCATCTAGATCCTGCTCAAAGGAGTCTCTATCGGGATGTGGTGCAGGAGACCTACAGTCACCTGCGCTCAGTGG

Seq A exon

GTAAGCATAGTCCCCTGGTATCAGACAGGAAGCCTCACTCAGCTTATTCTATTCTCAGTTGGATGTCTGCTCCAAGGCATCTTAAGAGGCTTTTAAAGTTTATTTCGTGTGTGTTTGTGCGCATATGCATGTGTGTCTTTCTCTAGTGTGTGTTCACCATTAAGGTGCAGTATCCATGGAGGCCAGAAGAGGGCATCAGATCCCCTAGAACTGTATTTACAGGCAGTTGTGAGTGCCCAATGTGGATGCTATGAACCAAACCTTCAAGTTGAGAGTAAATGCTCGTAACTGCTGTGTGTCTCTACAGCCCTGTCTGTGAGCAGGGTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTTTATAGCCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCGCCCGGTTAAGCAGGCTTCTTTATCTCCTTTGTGCATTATAAATATCCTCATATAAATATTTTCTCTTGCTCTTTGTGCATTATTAAAAAACTCATATAAATATGAGTCTTTAGACCTATGTGGTTCCTTCAGAACCAACTCTCACTGAAGTGGGCCTACGACTGGGCCCTGAAGCATGAGTAGTTGGGCCCAGTCCTTTATCATTTTCCATGGACGGGATATCAAGTTTCCAAGACAGAGGTTTTCATACTGGGGCAAGAAAAGGAAACATGGGCATTACAGAATGAGAGTCCATGCCAGCACTGTGGGACACAAGAGATCTTCAGCAAAGCCGCTGTCTTCTTGGCTTTAGATTTGTGTCTTTTTTTTTTTTTTTAACTTTTTTTCTTCACTTTCCCCATGGCTTTAGTCTTTATTTATACACACAGGTATTTATAAATCTTTCCTTCATAATTACTTTGTGATATACAAACCCATACTCCCATACACCTCTTTCCTCCTTTCCCTGTGAGATAGTTCAGCTCTGCCCCAGCTAGCTCTCTTCCTGCTGTTTTCCTGGCCACTGCATGAGATTTGTCATTGCTTCCAGCTTCTTGTACCTTTCCTTGAGCTTATGACCTGAGTATCCTTGTCACTTAACCTCTGGCAGTATCTGTCTGCTGCGTTTGACACTTTTAAAATTTTTATTTATTTATTTATTTTGGCTTTTTGAGACAGGGTTTCTCTGTATAGCCCAGGCTGTCCTGGAACTCAGTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCTGGCTTTTTTTTTGGGGGGGGGGGACACTTTTTTTAAAAGCTCTATTTATATGTGTGTGTATTTATGTATATATGTATGTATGTATATATCTATGTGAGTACACTGTCACTGTCTTCAGACACACCAGAAGAGGACATTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAACTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCGCTGAGCCATCTCTTCAGCCCCATGTTTGACATTCTTAATCATCTTTTATAAAGGTTAATTTTAATCCTGCCCAAGTGAGTCCACATTTGACAGAGTCTGTCTTTCTGGTTAGCTGAGTTTTGTTCTTGTTGTTATTTTATTACTGTACTTTACTGATGAGGCCTTCATTTAATTATAATTAAATTTATAATTATAAATGTATATCTTTTATATATTATATAAATGTAAATACATACATTTTAATTCTAATTCTGTCTTGGACTTATGATAAGGTGTTATGTTTCCCCTTTTCCCCTCTTTGGTTCACATCCTCTTCTCTCCCCACCGTGGATCACTGATTTACATAATGGAGACGTCCAAAAACCATCTGTATTAGAAAGTTTAAAATAAATTAGAGCCATGTAACAGTTTATAGGCATGTCAGCTTTCTCTGTAGCTCTTCTTTTTGCTTTACTTTGCTCATGCCTGCCTTATGTAATGTATCTACCTGGATGTATTTTATGCCTGGATGTTTCTTGTGCCTTACAATTTTCTTCCTCAAATTGCCCCCCTCCCCTCTTCTCTGTGTTTGTCCTGGGTGGGCCATGTGTGCTCTGACAGACACCTTGCTGTGCTGTTTCTCCTTTACAAAGGAACTTGGCTTTAGAGCTGGGAGTTCTGAAAAAGCCTTTTTACATATCAAGTGAGAAGGTAGTTTTGCTCTTGCTTTGTTTTGTTTTGTTTTTTACAAATGACGTTTTCTCATATTTCATTCTAG

Seq C2 exon

AAGAACTACAGCAGATTGGTGACCAGAAAAAGACCTACCAGCAAATAGGACATAAATCAGCGAGTGATATGGTTTTCATCACGAAGACGCTGGGTGCAGAGAGTTGCCATGACTACTCAGGCGTTAGGAAGGTGATTCATGTGAACTCATACATTGTTCTCCCTCCCAAGAGGCCACGTCACTGGGACCCACCTGAGGATGAGCCGAAGCATAGTTCAGATTTACAGACTCATGATGAAAGTAATGGGCTGAAGAGAACTAAAAGGATTACTGAATATGGTAAAATTTCATCCTGTATCAACACTGAACATATTCTAACAGGAGAGAAATTACCGGACCATAATCAATGTGGAAAAGTCCTCGGTTATAAACAAATACCTTGTCAATATCAGAAAATTCATACTGGGGAGAAATCATATGAATGTGCTGAATTTGGAAAGATTTTTACCCAGAAGTCACAGCTCAGAGTACACGTGACGTCTCCTACAGGAGAAAAACTCTACGTGTGCGTCGAATGTGGGAAGGCATGTTCTCAGACGTCAGAGTTCCTCACACATCAAAAAACCCACACCAGGGAGAAGCCCTATAAATGCGGTGACTGTGGAAAGTCCTTTTTCCAAGTATCTTCTCTGTTCAGGCACCGGAGGATCCACACTGGAGAAAAGCTCTACGACTGTAGCCATTGTGGGAAAGGCTTCTCTTACAACTCAGACCTCAGGATACATCAGAAGATCCATACAGGAGAGAAACGCCATGGCTGCGTCGACTGTGGCAAAGCCTTCACACAAAAGTCCACACTGAGGATGCACCAGAAGATCCACACGGGCGAGAGGGCCTATGTCTGTATTGAGTGTGGACAGGCTTTTATCCAGAAGACACACCTGGTCGCACACCGAAGAATTCACACTGGAGAGAAGCCATACGCGTGTGACGGCTGTGGCAAAGCCTTCCTTTCCAAGTCCCAACTCCTGGTCCACCAGCGAATTCACTCAAGAGTGAGGCCCTGTGTATCTCTCGACCGTGCGAAACCCTTCAGCAGCGCTCCCAACCTCCTTCCGCGTAAGAAAGTTCAAATGAGAGAGAAATCGTCCATCTGCGCGGAGTGTGGGAAGGCCTTTACCTACAGGTCGGAGCTAATCATTCATCAGAGAACTCACACGGGAGAGAAGCCTTATCAGTGCGGGGACTGTGGCAAAGCCTTCACCCAGAAGTCAGCCCTCACCGTGCACCGAAGAATCCACACGGGGGAGAAGTCGTATGTGTGTGTGAAGTGCGGGCTAGCCTTCGTGCAAAGGGCACACTTGGATGCACACCAGGTGATTCACACTGGAGAAAAACCTTACCAGTGTGGTCATTGTGGGAAATTCTTCACTTCCAAGTCGCAACTCCACGTGCACAAGCGGATTCACACGGGGGAAAAACCCTATGTGTGCAGTAACTGTGGGAAGGCCTTTGCCAACAGGTCAAATCTCATCACACATCAGAAAACTCATACAGGGGAGAAAGCCTATGTCTGTGCAAGGTGTGGGAAAGCATTCACTCAGAGGTCAGACCTGGTTACACACCAGAGGATACATACCGGAGAGAAGCCATATGGGTGTAGCACCTGCGGGAAAGCCTTTACCCAGAAATCACACCTCAGTATACACGAGAAGATTCACACCGGAGAGAGACAGTACGGATGCCGAGACTGTGGGAAAGCCTTCAACCAGAAATCCATACTCATCGTGCACCAGAAAATCCACACGGGGGAGAAACCGCACGTGTGTGCCGAGTGCGGGCGAGCTTTCATCCGCAAGTCCAACTTCATCACCCATCAGCGCATCCATACTGGCGAGAAACCTTATGGATGCACCGACTGCGGCAAGTCCTTTACCTCCAAGTCGCAGCTCCTGGTGCACCGGCCAATCCACACCGGCGAGAAACCTTACGTGTGTGCCGAGTGTGGGAAAGCCTTTAGCGGCAGGTCAAATCTCAGCAAGCACCAGAAGACTCACACTGGGGAGAAGCCGTACGCGTGTTCAGAGTGTGGGAAGTCCTTCAGGCAGAAGTCAGAGCTGATTACACACCACAGAATCCACACTGGGGAGAAGCCGTACGATTGCGGCGACTGCGGGAAATCCTTCACTAAGAAATCCCAGCTCCAAGTGCATCAGCGAATTCACACAGGAGAGAAGCCGTACAGATGTGCCGAGTGCGGGAAGGCCTTCACCGATAGGTCCAATTTGAATAAACATCAAACAACACACACCGGAGAGAAACCTTATAAGTGTGTAGTCTGTGGGAAAGGCTTTGTGCAGAAGTCAGTGCTCAGCATTCATGAGAATGTTCACACCTCGGCAGTATGAGAAAGGACCCATTGAGGACACGTCTTATGTAATTACTGTCTCTATAGGACAGAATAATATGTATATTATTGTAAGTAAAAATGCCACATGACAGTGTCACACATTACTGCTCAGAAAAAGATCTCAGAGAAGGCACTGAATGGGATTATGGGGCAGGACATTTCTACTTGCTGAGAAGAAATTGCATCAATTTGACACAATAGAAGCGTTCTCATGGTAAAAAACACAGTGGAACATTGTCATCAAGTTCTTCACAAGAAAGATTGTGTCAACTCATGTTGATGCAAAAATCCTGTTGGTGGAGTATGTCTACTGCCAACTAATTACATGGTAATCTAATCTAATATAATGTACATGACAGGGACCATCTTCTCTTCTGTCACTTGTTTGCTGCAAACATTAATAGACCTGTGGGTGTGTTTGCATTCTTGGTCAGATCTAACATAACTGGCACATCCAATCCTTCTGTTGAGAGACATACACTACAGGCCTGGGTGTGGCATTTCGTGCCAGTAATTCCAGCCTTTGGGGAAAGCTGAGGCAGGAGGATTACCATGAGTTCAAGACTAGTCTGAGCTACAGGGTAAGACACTGTCTCAAAAACAAGAGAAGGCCACAGTAAAGACATAGCCTAACACGAACTTGAAAGTGTACCTGGCCTTCCTGTCATTTACACCAGGACATGTCACAGACTTTATAAGCTACCAGTGCTATCTTTGTAAAAAGACCAACATGTCTCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000062040-Zfp27:NM_011754:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.026 A=NA C2=0.096

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

NA

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF097235=Zn-ribbon_8=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000054012

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

ENSMUSP00000082943, ENSMUSP00000123953, ENSMUSP00000124684, ENSMUSP00000125232, ENSMUSP00000127677

Associated events

Conservation

Human

(hg38)

No conservation detected

Human

(hg19)

chr19:37678465-37680818

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chr18:47468713-47469967

ALTERNATIVE

BtaINT0008255

([1])

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

No suggested primer sequences

R:

No suggested primer sequences

Band lengths:

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

Special

MmuINT0178841 @ mm9

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]