BtaINT0008255 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:47468645-47470060:-
Coord C1 exon
chr18:47469968-47470060
Coord A exon
chr18:47468713-47469967
Coord C2 exon
chr18:47468645-47468712
Length
1255 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGTTGTATTTTATTTTAGAAG
3' ss Score
8.18
Exon sequences
Seq C1 exon
GATATCAAGTTCCTGAAACCAAGGTTTTCATGTTGGAACAAGGAAAGGAGCCATGGGCACTGCAAGGTGAGGGCCCATATCAGAGCTGTCCAG
Seq A exon
GTGAGTGAGAGTGACCCAGACTGATGGGACACAGGGGAGTAAATCTCAGCCATCTTGAGAAAGGCTGGCATCTTTGAATTGCTGTTAGTATGACTCTTCTGAAAGGTTCTGATTTTTTTTTTTTTTTTTTCCCTTGAGAGCCCTTGACATTGCCCTTTGAAATAACTAAATGCCTTCTATGTAAATGCCTTTGTCAATTCTAACTATCTTCTTCATTGGCTTTTTGGCCTCTGGCTCACATGCCAATCTGCCTCATTAAGTATTTTCTTTTTATCTTGGTTATGCTCACTTTCTCTAACACTCTTTTCTTTCTGCCTTCCCCATTGTCTGAGATTCACTCTCTATGTATTCAGCTGTTTGTGGATTTGCTTTCTTTAAAACTTACTATGTGTCACACACTCCCATTCCTGCTAGTCCTCTCTCATTTCTTATTGTGAGATGGTTCTAAACTTTATCTCCAGTCATGCTGTCTTCCTGTTTTCTCCATAGTCACGGACTTCAGATTTCTCATTTTCCCATTCCCTATGCCTTTCTTCCAACTGATTACTTAGGCTCACTGTCACTTAACTGTTACGAGTACCTTTCTGACTTTCCTTCCAAATTACTTAGACTTCGTACTGACTGGGGACTCGCTGCCTGGCTGACAGATTTTTGAAATTGCTTTATTTCTGTACTTTGCAAGATGAGGTTTGAGTTTGATCATGTCTTCATTCAGGATGCACTAATATCATCAGTATGAGCAAGGATTCTCTAGGATTTTTTTTTCTATTTATTCCTTTTTTATTCTTTCCCCCATACTCATCTCACTTCCCATCACAGGCAATTGTTTCTTATGATAGAAAGATACTTTTCAGTTCATATGTGGTCTTTTAAAGTTTAAAATGACTTGGGGTATGTATTATTAATTTATATAAATGTTATTGTGCTGTATATCTTGTTCTTTGCCCTTTTTTCACTTCTGCACATAGTGAATTGAGTTCATAAAGTTTATTCTCTAAATAAACTGAATTCTATCCCAGGTGTTTCCTGTCACCCCTGTCACCAAGTCTACTAAGTCATTAATTCACCCTCATCACTCTTCATTGTGTTCAACTTGGATGAACCATATGAGCCTCTCATCTTGCCTTAGCTAGCTGTTCTTTGAGCTAAAATCATTCTCCTTTGAGAAGGAGACTTTGGGTTTCAACCTCAAAAATTTTCTATGTTGAGAGGGAAGGTGATGCTACAAATGACGTTTTGTTGTATTTTATTTTAG
Seq C2 exon
AAGAATTGTGGCAGATTGGTGACCAGATAGAGAGCTATCATCAGAGAGAAAACAGATCTTTAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040063:ENSBTAT00000057256:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development