MmuINT0178919 @ mm10
Intron Retention
Gene
ENSMUSG00000041483 | Zfp281
Description
zinc finger protein 281 [Source:MGI Symbol;Acc:MGI:3029290]
Coordinates
chr1:136624901-136630053:+
Coord C1 exon
chr1:136624901-136625051
Coord A exon
chr1:136625052-136625271
Coord C2 exon
chr1:136625272-136630053
Length
220 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCCCTCCTCTCCGCAGCCAGGCC
3' ss Score
3.57
Exon sequences
Seq C1 exon
GCCGAGCGCCCCTCTGGTCCGGTCGAGGACTTCCCGGCAGACACCGCGCCGCGGCTGCGCAGAAGCGGGGAGGCTTTTAATTCCATTGTGGAGAGGACGGCGTTATTTTTATTAACTGGAGGCGACGGCGGCTGCGGCGGCGGCGGAACCC
Seq A exon
GTAAGTGTGGCCGGCGGGCCGGGGCGGGCGCGGGAGCGGCCAAGAAGGCCGCGGGGTCGAGCGCGCCGGGCCGGAGGCGGCGGGGCTGCGGACGGGAGCCGGGCGCGGTGCGGGCTGGGCGGCGGCGCGGCGGGTCCCAAACGCTGCGGTGGTCCCGGCCCGGGGCCCGGCCCTACCGCCGTTCCCCCTCTTCCCTCCTCTCCCTCCTCTCCGCAGCCAG
Seq C2 exon
GCCTCCTCCGGGGTATGAAAATCGGCAGCGGGTTCCTTAGCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCGGCTCCGGCGGCAGCTCCGGCAGCGCCAGCGGCGGCAGCGGCGGCGGCAGGAGAGCAGAGATGGAGCCCACCTTCCCCCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGTCACCAGCTTCACCCGGCCGGCGGGGACGGCCGCCCCTCCCCCGCAGTGCGTGTTATCCTCCTCTACCTCCGCAGCCCCGGCCGCTGAGCCCCCCCCTCCGCCAGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGGCGTCAGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCACCATCACCACCACCACTATGGGGGGCTGTTCGCTGGGGCTGAAGAGCGATCACCAGGCCTAGGAGGAGGGGAAGGGGGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATATCTGTGATCACTGTAGTGCTGCTTTCAGGAGCTCCTACCACCTGCGGAGACATGTCCTCATCCACACGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTTCATCCAGAAATACCTACTGCAGAGACACGAGAAAATTCACAGCAGAGAGAAACCCTTTGGGTGCGATCAGTGCAGCATGAAGTTTATTCAGAAGTACCATATGGAGAGACACAAGAGGACACATAGTGGAGAAAAGCCATACAAGTGTGACACTTGCCAACAGTATTTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCATAGCAAAAGGAGCCGCTAGTGCAGAACCTGGGTCATCAAACCATAACAGTATGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAGCTATTGAAAATAAGGAACACAAGACTGGCAAAACAAATGAATCACAAATGTCAAACAATATAAACATGCAGAGTTATTCAGTAGAAATGCCTACTGTGTCTACCAGTGGGAGCATAATTGGCACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAAATTGATCTTTAAGAAAGGAAGCAGAAAGAATGCAGATAAAAGCTACCTTAATTTTGTGTCACCGTTACCAGACGTAGTTGGGCAGAAATCCTTGTCTGGTAAGCCAGGTGGCTCACTTGGCATCGTATCGAATAATAGTGTGGAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAATTATGATGATGCCATGCAGTTTTCAAAGAAGAGAAGATACCTACCAACTGCCAGCAGCAACAGTGCCTTTTCTATCAATGTAGGACACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTCACTTATTGACTCCTCAGCTCTAAATGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAATTCCTGATGAGGTTTTACAAAGTATTTTGGATCAGTACTCTGGCAAATCAGAAACACAGAAGGAGGATCCTTTCAATTTAACAGAACCACGAGTGGATTTACACACCTCAGGAGAACACTCTGAATTGGTTCAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCTTCAAATGATAAAACAAGCATGTTGCAAGAATACTCCAAATACCTCCAACAGGCTTTCGAAAAATCCACTAATGCAGGTTTTACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTACATCTCCTTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAGTGCTGCCATCTTCGTTGCCAAAGCCTCCTTTTGGGATGTTGTTTGGATCTCAACCAGGTCTTTATTTATCTGCTTTGGATGCTACACATCAGCAGTTGACACCTTCCCAGGAGCTGGATGATCTGATAGATTCTCAGAAGAACTTAGAGACATCATCAGCCTTCCAGTCCTCATCTCAGAAATTGACTAGCCAGAAGGAACAACAGAAAAATTTAGAGTCCTCAACGAGCTTTCAGATTCCATCTCAGGAGTTAGCTAGCCAGATTGATCCTCAGAAAGACATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTCAGTGTCAGATTTCTCAGGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTAAAGACACCCACCAGCCAGAGTTACAGGTAAGGTCTCGAGAGTGACCAGGCTGGGAGTCTAATGTAATTTTGTTTTATTTTGAGAACACTGCCATTGGAATGTTTCTACACGATCCTATTAAGAATAATGTAATGCCCTTTCAATGCAACTTTTCATATTTAGTTTATTTTGTTAGTGTGATTTTAGCTCTGTTTGTATTATGATTTTTAATCAAAATCAATAGATTAAAAATAGTTTGACATTCAAAGTGACAATGTTTAGCAATCAAATTTACATGTATAGATTGTCAGGGAATAGCCCAAAAGTTTTAAATGCAAAAACAAAAAAAATAAAACAAAACAAAAAAAGTACAGAAAAAAAAAAAGAAAAGAAAAAAGGAAAAAAAAAGAAACTTTGTTGCTAGGATTAAGGTTATTCTAATTGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAGTATGATACACATTTCGTTGTTTAAGTTAAGGGATCTTAAACATTTCAGATTGCTCTTTCTGGGCTAATAGAATATACATTTCATCATTTAAGTAAGGGATCGAAAACATTTCAAGTGCTATCTCTGTCTGGGCTGATCCAAAATTCTGAGATTGTTGGCTACCTATATTTTGTTGCAGCTTTTCAATGTACTCCACACTTCCAAACCCAGATTCATTCCAGATTGGTAGAACAAATATTCTTAGATCTTTGATCAAAGCCTGGAATGATAGCTTTAATAAAAGAAAGAGGAAAAAAACCATCCTCTTTATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCTCTAGTACAGTGTTAAAATTAAAAACCCAAGTGTTTGGTTGGTTTCAGTATTAGAAAGTAAGTTCAATTCACATAGTCTATTGAAATTTGGGGTGTGCATTATTCATGGCCTAAAACATTCTCTTGTTTAAGCTATTACTCACCACCTTCACGTCTGGGTTTGGTATTTGTTCTTAACTTCTTAAAGTTCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATTTATCATCTAGAAGATAATTGATTATGCATTTTATATGTCGTAAGACATTCAAATACTAAACAATAGGGTAAACATCCCTGACTTTGCTTTTCTTTTTATTTTGTTAACAAACCCAATACCGACTTCCACGTACAAGCTATACATAGATGTCAAAGGGTTGTCATCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGACATCAGAACTCTTTGTGAAATTGCAGCCTTTAATGTACATTTTGAAGGGGTGTATTAGTCAGTATTGTACAGGGATCTTGTCATCAAAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGATAGGCAGTGGCTCTGCTCTAAACCACTTTTTAGCAATTGTATTTTTTCCTGATTATATTTTTTAATGTACTTTGATGTTTATGCTGATGAGTTTTTATGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGCAGTCTCATTGTGTAATCAGCCTACCACAGGCTTCCATGTATAATAAAGTAATTAATATTGTGCAAGTGTAAAACACTTCTGTTATAAAAGCAGTGTTTGGAAAATAAGAAATTATTAAAAATGGTTACAAAATACTAGTTAATTCCCTTTTCCCACCTTCCACCTTTTAGCTTTAGTTAGCTAAAGGGTACCAACTTGTCATTGAAAGATTTTTAGAAATGTGTTTAATTCTTTTAATACACTCAGTACTAAAATGTCTGTATGTCTTATTAAGTGCAGTAAGTTCTGTTGGGTACAGAGACAAGTGTGATCAAAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTCTCTTCTCTTTTGTTTTATACAGGTTTTGAATTTCTTTAACTTTTATTGTGTGTACTGAATACTACATATGTATTATTCTGATTGTTTGCTCTAGTTTACTACCAATAAAAGTCCTGTTAATCACAACATTGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041483:ENSMUST00000047734:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTAACTGGAGGCGACGGC
R:
GAGGAGGATAACACGCACTGC
Band lengths:
296-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types