MmuINT0178919 @ mm9
Intron Retention
Gene
ENSMUSG00000041483 | Zfp281
Description
zinc finger protein 281 [Source:MGI Symbol;Acc:MGI:3029290]
Coordinates
chr1:138521478-138526968:+
Coord C1 exon
chr1:138521478-138521628
Coord A exon
chr1:138521629-138521844
Coord C2 exon
chr1:138521845-138526968
Length
216 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
CCTCTCCCTCCTCTCCGCAGCCA
3' ss Score
11.92
Exon sequences
Seq C1 exon
GCCGAGCGCCCCTCTGGTCCGGTCGAGGACTTCCCGGCAGACACCGCGCCGCGGCTGCGCAGAAGCGGGGAGGCTTTTAATTCCATTGTGGAGAGGACGGCGTTATTTTTATTAACTGGAGGCGACGGCGGCTGCGGCGGCGGCGGAACCC
Seq A exon
GTAAGTGTGGCCGGCGGGCCGGGGCGGGCGCGGGAGCGGCCAAGAAGGCCGCGGGGTCGAGCGCGCCGGGCCGGAGGCGGCGGGGCTGCGGACGGGAGCCGGGCGCGGTGCGGGCTGGGCGGCGGCGCGGCGGGTCCCAAACGCTGCGGTGGTCCCGGCCCGGGGCCCGGCCCTACCGCCGTTCCCCCTCTTCCCTCCTCTCCCTCCTCTCCGCAG
Seq C2 exon
CCAGGCCTCCTCCGGGGTATGAAAATCGGCAGCGGGTTCCTTAGCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCGGCTCCGGCGGCAGCTCCGGCAGCGCCAGCGGCGGCAGCGGCGGCGGCAGGAGAGCAGAGATGGAGCCCACCTTCCCCCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGTCACCAGCTTCACCCGGCCGGCGGGGACGGCCGCCCCTCCCCCGCAGTGCGTGTTATCCTCCTCTACCTCCGCAGCCCCGGCCGCTGAGCCCCCCCCTCCGCCAGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGGCGTCAGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCACCATCACCACCACCACTATGGGGGGCTGTTCGCTGGGGCTGAAGAGCGATCACCAGGCCTAGGAGGAGGGGAAGGGGGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATATCTGTGATCACTGTAGTGCTGCTTTCAGGAGCTCCTACCACCTGCGGAGACATGTCCTCATCCACACGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTTCATCCAGAAATACCTACTGCAGAGACACGAGAAAATTCACAGCAGAGAGAAACCCTTTGGGTGCGATCAGTGCAGCATGAAGTTTATTCAGAAGTACCATATGGAGAGACACAAGAGGACACATAGTGGAGAAAAGCCATACAAGTGTGACACTTGCCAACAGTATTTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCATAGCAAAAGGAGCCGCTAGTGCAGAACCTGGGTCATCAAACCATAACAGTATGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAGCTATTGAAAATAAGGAACACAAGACTGGCAAAACAAATGAATCACAAATGTCAAACAATATAAACATGCAGAGTTATTCAGTAGAAATGCCTACTGTGTCTACCAGTGGGAGCATAATTGGCACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAAATTGATCTTTAAGAAAGGAAGCAGAAAGAATGCAGATAAAAGCTACCTTAATTTTGTGTCACCGTTACCAGACGTAGTTGGGCAGAAATCCTTGTCTGGTAAGCCAGGTGGCTCACTTGGCATCGTATCGAATAATAGTGTGGAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAATTATGATGATGCCATGCAGTTTTCAAAGAAGAGAAGATACCTACCAACTGCCAGCAGCAACAGTGCCTTTTCTATCAATGTAGGACACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTCACTTATTGACTCCTCAGCTCTAAATGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAATTCCTGATGAGGTTTTACAAAGTATTTTGGATCAGTACTCTGGCAAATCAGAAACACAGAAGGAGGATCCTTTCAATTTAACAGAACCACGAGTGGATTTACACACCTCAGGAGAACACTCTGAATTGGTTCAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCTTCAAATGATAAAACAAGCATGTTGCAAGAATACTCCAAATACCTCCAACAGGCTTTCGAAAAATCCACTAATGCAGGTTTTACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTACATCTCCTTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAGTGCTGCCATCTTCGTTGCCAAAGCCTCCTTTTGGGATGTTGTTTGGATCTCAACCAGGTCTTTATTTATCTGCTTTGGATGCTACACATCAGCAGTTGACACCTTCCCAGGAGCTGGATGATCTGATAGATTCTCAGAAGAACTTAGAGACATCATCAGCCTTCCAGTCCTCATCTCAGAAATTGACTAGCCAGAAGGAACAACAGAAAAATTTAGAGTCCTCAACGAGCTTTCAGATTCCATCTCAGGAGTTAGCTAGCCAGATTGATCCTCAGAAAGACATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTCAGTGTCAGATTTCTCAGGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTAAAGACACCCACCAGCCAGAGTTACAGGTAAGGTCTCGAGAGTGACCAGGCTGGGAGTCTAATGTAATTTTGTTTTATTTTGAGAACACTGCCATTGGAATGTTTCTACACGATCCTATTAAGAATAATGTAATGCCCTTTCAATGCAACTTTTCATATTTAGTTTATTTTGTTAGTGTGATTTTAGCTCTGTTTGTATTATGATTTTTAATCAAAATCAATAGATTAAAAATAGTTTGACATTCAAAGTGACAATGTTTAGCAATCAAATTTACATGTATAGATTGTCAGGGAATAGCCCAAAAGTTTTAAATGCAAAAACAAAAAAAATAAAACAAAACAAAAAAAGTACAGAAAAAAAAAAAGAAAAGAAAAAAGGAAAAAAAAAGAAACTTTGTTGCTAGGATTAAGGTTATTCTAATTGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAGTATGATACACATTTCGTTGTTTAAGTTAAGGGATCTTAAACATTTCAGATTGCTCTTTCTGGGCTAATAGAATATACATTTCATCATTTAAGTAAGGGATCGAAAACATTTCAAGTGCTATCTCTGTCTGGGCTGATCCAAAATTCTGAGATTGTTGGCTACCTATATTTTGTTGCAGCTTTTCAATGTACTCCACACTTCCAAACCCAGATTCATTCCAGATTGGTAGAACAAATATTCTTAGATCTTTGATCAAAGCCTGGAATGATAGCTTTAATAAAAGAAAGAGGAAAAAAACCATCCTCTTTATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCTCTAGTACAGTGTTAAAATTAAAAACCCAAGTGTTTGGTTGGTTTCAGTATTAGAAAGTAAGTTCAATTCACATAGTCTATTGAAATTTGGGGTGTGCATTATTCATGGCCTAAAACATTCTCTTGTTTAAGCTATTACTCACCACCTTCACGTCTGGGTTTGGTATTTGTTCTTAACTTCTTAAAGTTCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATTTATCATCTAGAAGATAATTGATTATGCATTTTATATGTCGTAAGACATTCAAATACTAAACAATAGGGTAAACATCCCTGACTTTGCTTTTCTTTTTATTTTGTTAACAAACCCAATACCGACTTCCACGTACAAGCTATACATAGATGTCAAAGGGTTGTCATCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGACATCAGAACTCTTTGTGAAATTGCAGCCTTTAATGTACATTTTGAAGGGGTGTATTAGTCAGTATTGTACAGGGATCTTGTCATCAAAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGATAGGCAGTGGCTCTGCTCTAAACCACTTTTTAGCAATTGTATTTTTTCCTGATTATATTTTTTAATGTACTTTGATGTTTATGCTGATGAGTTTTTATGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGCAGTCTCATTGTGTAATCAGCCTACCACAGGCTTCCATGTATAATAAAGTAATTAATATTGTGCAAGTGTAAAACACTTCTGTTATAAAAGCAGTGTTTGGAAAATAAGAAATTATTAAAAATGGTTACAAAATACTAGTTAATTCCCTTTTCCCACCTTCCACCTTTTAGCTTTAGTTAGCTAAAGGGTACCAACTTGTCATTGAAAGATTTTTAGAAATGTGTTTAATTCTTTTAATACACTCAGTACTAAAATGTCTGTATGTCTTATTAAGTGCAGTAAGTTCTGTTGGGTACAGAGACAAGTGTGATCAAAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTCTCTTCTCTTTTGTTTTATACAGGTTTTGAATTTCTTTAACTTTTATTGTGTGTACTGAATACTACATATGTATTATTCTGATTGTTTGCTCTAGTTTACTACCAATAAAAGTCCTGTTAATCACAACATTGAAGAAAGGAGATATCACTTAGTCTCTGTGGATTACATTTCATAAAATATTCGTATTGATAGTATAAATTGTAACGTAGGAGCTTGCCGTTTTATTGTATTTATAATGTATTTTGTCTTTCTAGGTTTATTTAAAAATGCATTGAATATTTTATTTGAGGTGCACAATAATATAAAGAATAGAAATCTAATGTAAATTACATTATGTTGAAACTAGGCTAACCATCCTAAATATTAGGGAGATTATTTATTGAGGCTTTATTTAAAATCATATCAAAATATTTTTGGCTTAAGGTGTTATATATCCTTTTGCCTCAAAGGGTTATAATAAAATTATAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041483-Zfp281:NM_001160251:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTAACTGGAGGCGACGGC
R:
GAGGAGGATAACACGCACTGC
Band lengths:
300-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: