MmuALTA0020562-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041483 | Zfp281
Description
zinc finger protein 281 [Source:MGI Symbol;Acc:MGI:3029290]
Coordinates
chr1:138521478-138521949:+
Coord C1 exon
chr1:138521478-138521628
Coord A exon
chr1:138521845-138521848
Coord C2 exon
chr1:138521849-138521949
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
CCTCTCCCTCCTCTCCGCAGCCA
3' ss Score
11.92
Exon sequences
Seq C1 exon
GCCGAGCGCCCCTCTGGTCCGGTCGAGGACTTCCCGGCAGACACCGCGCCGCGGCTGCGCAGAAGCGGGGAGGCTTTTAATTCCATTGTGGAGAGGACGGCGTTATTTTTATTAACTGGAGGCGACGGCGGCTGCGGCGGCGGCGGAACCC
Seq A exon
CCAG
Seq C2 exon
GCCTCCTCCGGGGTATGAAAATCGGCAGCGGGTTCCTTAGCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCGGCTCCGGCGGCAGCTCCGGCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041483-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGAGAGGACGGCGTTAT
R:
GCCGATTTTCATACCCCGGAG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: