MmuALTA0020562-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041483 | Zfp281
Description
zinc finger protein 281 [Source:MGI Symbol;Acc:MGI:3029290]
Coordinates
chr1:138521478-138521949:+
Coord C1 exon
chr1:138521478-138521628
Coord A exon
NA
Coord C2 exon
chr1:138521849-138521949
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCCCTCCTCTCCGCAGCCAGGCC
3' ss Score
3.57
Exon sequences
Seq C1 exon
GCCGAGCGCCCCTCTGGTCCGGTCGAGGACTTCCCGGCAGACACCGCGCCGCGGCTGCGCAGAAGCGGGGAGGCTTTTAATTCCATTGTGGAGAGGACGGCGTTATTTTTATTAACTGGAGGCGACGGCGGCTGCGGCGGCGGCGGAACCC
Seq A exon
NA
Seq C2 exon
GCCTCCTCCGGGGTATGAAAATCGGCAGCGGGTTCCTTAGCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCGGCTCCGGCGGCAGCTCCGGCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041483-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGAGAGGACGGCGTTAT
R:
GCCGATTTTCATACCCCGGAG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: