MmuINT0178929 @ mm9
Intron Retention
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62598381-62601546:-
Coord C1 exon
chr11:62601461-62601546
Coord A exon
chr11:62598496-62601460
Coord C2 exon
chr11:62598381-62598495
Length
2965 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGTATATTTGTGTCTTAGGAA
3' ss Score
6.2
Exon sequences
Seq C1 exon
CTCTGTCTTCCCCGGATTCTCTCCTTTCCCACGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACTGTCAGATCCCAG
Seq A exon
GTGAGTCTCTATGGGTTACTGAGATCAATTCCACCTTGGGTCTCAGAGCACAGATGCACTCCCTTTTTGATGTGGCATTTCGTTGTCCACAGAGCCCATCTAGAGACCTGAGTTCTAATTCTAAGAAACTAGTGGACTCAGTAGAAAATATTTTCTGCTTACTCATAGTATCTCTCTTCTCCATCTAGTATTTCTTGTCTCTCTACAGGCAGGTAAGTCACATTTCTCTTCTTTCCCAACTCTGCTAATTTCTGTATTTGGTCATGTGGAAAGCTAACTTAAGGGTCATATAGTATATACTTCTTAAAACTTGCATTTCTCTAAGGGAAGCAGCACACATATGGCTGTAAATAGGAGCTTAAAAAACACCTTAAATGCTGGAGAAATGAGAATAATAATAATACCTACTCAGTTAAAACTTAGATATGGAATGGTCTGTGGTTTTACTAATTACAGGTCCATACTGCATTCTGCAGCCCCAGAATCCCTCAGTCAGCCTCTTCTCCATACAATGTTTGTAAAAATGACTTCCGGCCCTTTTTGGACTTTCTGAACTGCCCTGTGAGTCTTGCAGACTTAATTAACCCCAGGGGCTTACATACCATCTACAGAAACCATCTTACACTGGCTTGTGCAAGGAGGTGTCTTTACTGACCATACTAACTGTTGGGCTAGATAAAGGATTTAGGCAGTAACGTAGAGAGCTAGCATGTCCATCTTGTCAACCTTTTTCTAAAACTTTGAGAGTTTTGCCCATAAGCAGGCTTTTTTTTTTTCATGCCATCATCAAACAAATGTAGGCTTGCATCGTTAAGGTGGAAGGTTGGGCGTTCTCCTGCTGCTTATATTAATTCTAGCAGTATATAAAAGAGCCATTTTCTGCACCATTACTGATGTTAACCAAGTGTAATTGTTCGAGGAGTATAACTGTGCGCACGCTTGTAGACACAGTCCACCCGTAACTCCAAGGTGGAATCAGTTCTATCTGATGCCCCCAGGCCTGAATTGCCCAGCACAGAGGGACAGAAAAATCGGGGGACAGATACTGAAAGGAGAGCGAGCAGTTTTCATGCCTGGATACTAGATGGAAGACTCTTATGTCATCATGGTGGATCTTTTATGGATATTTTAAAAGTCTGTCCTTTTTTAAAGTTATTAGATTTTATTTAATGCTAATACTGGAAATTTTGTGTTCAAATCTCCCTGAGTTGATAGGGTTTTCTCCATCTTTTTCTTACTAGGTTTGGAACATATGTATATTAATTTTATTTCTCACTGATCTAATAAGCAGCACAGAATATGGATATGTATAGGCATGATAAATTTCCACCCCTTATCTCCTTCTTACAGAGGATAACTGGTGGTTATAGTATTGAATCCAGATAAAGTTTCTGCTTTTGTCCTATAATTCTCTTTCTGAGTTGTTCTGATTCTTTGATATGATCTGTGTGCTCTTCTCTTGTATTTATGTGTTTTTAAAATATGTTTTCAAGAATGCTGTGCATCTCCCAAGTATTTAGCCATTTAAGACTGGGCTTGGCAGTTTGTTCCTATTTCTGTTTTTATGTTCCAATATAGTTTGGCAGTTATCATCAGCTATGGCTTTATTACATTCCTATTTGGAAATTTACTAAAATCTACTTTGTTGGGTTTTGCAAATATTTCATGCATATTTAAATAGAAGGTGCTTTATGTCCAAGTAAGCAACTGTTACATTGTTTCAGCAAACTTGGAATTTTGTTCCCATTCCCTATGGCTTTACTTGAAGGGGCACAGTCAGTTCCAGTATGTAGCCAACCTCTGCCTTTTGTTGTCGTTGTTGTTGTTGTTGTCATTGATGCTACAGAGATATACCCTTACGGCATTTTCCTTGTAAGCACTTTTGAATTACATCTGTAACCTTACTCAGCATGTCACATTTTCCAACTTAATGGCCCTTTACCTTGAATTAATTCCACATTTCACCAGATTTGCTGCTCGATGCCAGTTCTTTCATCCTATGACCTCTCTATCTTCCTGAAGACTACATCATGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTAAGGAGTTATAGGGGAAGTATGCAGACATTCTCTTTGTTTCTCACTATGTATATCTTAATTTTTTGACATGAAAATGGTAGTTTCTCAATGGTGCAAACATAGTCTTATTTCATGTTTAGTCTCACACTGCCTGGTACTCACTGAAAGTGCATAGACTATTGGGGAATCATAGAGTATTGGGGCTCTAAACACTATGAGAAAACCCACCGCTTCCCTTGTTGAGTGCATCTTGGCCTTCTGCTTTATTTCCATTAAGAACGGAATGAAAGAAAGAGATATTGTGTTAGTCAGGTTTCCTTAGAAGAACAGAGCTGATAGAATGAACCTGCATAAAGGAGCTTTATTAGGGTGGCTGAGAGACTGTTCCAGCTAGTCTGGCAGCAGCTGGCTCCTGATAGAAAGACCAAGAGTCCAGTAGTTGTTCAGTCCATGAGGCTAGACTGGTGGTGGGAACGGCTAGTCTTCAGTATATGTCAGGATCTCAAAGAAGTCGGCTCTAATGCCAGTGAACAATGCCTGGGCAGCAGGATATATAGCTTGCCAGTGAGGCTGAGAGCAAGTAGGCAAAGCAAAAGCTTCCGTTTCCTATGTCTTTTATATCTGCCACCACGAGAAAGTGTGGTCCAGACTTAGGGAGGGTCTACTGAAGAGATATGGATTTAAGGTGAACTTCCTACCTCAAATGATCCAACGAACAAAAAACAAAAACAAAAACAAAAAAACAGAAAACAAAAACCAAAGAACCTCCCTCACAGGTGTACCCAGCTGCTTGGGTTTATAGAATTCCTGATATAGTCACGTTGACAACCAAGACTAGCCACACAGGTATTAACTAAAAGATGATAAAAAAAAAAAAAGTATATTTGTGTCTTAG
Seq C2 exon
GAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCACACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-Zfp286:NM_138949:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: