MmuINT0179068 @ mm9
Intron Retention
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:50872759-50873656:+
Coord C1 exon
chr11:50872759-50872904
Coord A exon
chr11:50872905-50873573
Coord C2 exon
chr11:50873574-50873656
Length
669 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTTCTTTCCACCCTCAGATC
3' ss Score
12.24
Exon sequences
Seq C1 exon
CAAGATCTGACCCCCCCGTGAGCCTTCGCGGGTCTTAGGGCGTCTGTGGCGCGGCTCGAGGCTAGGGGCCAAGGTCCCCGTGCAGAGTCCTTACCCGCGGCGGCTCAGAGCATATGTGAGGCGCGGCGGGAGCCGGAGGAGGGAAG
Seq A exon
GTGAGTGAAGGCTCGATATGTTCGGACGTCAGACAGGGGCTGGGCTGGGTTTGGCTCGGCGGCCTCCTGCGCGTCCCCCTCCCCAGAACGCGCGCTCCCAGTGGCCTTGGCTCTGGACTGCAAGTGACCTGCTCCCCACCGCCCGGGCAGTGACCACGCAGGCTGTGTTTTCCGTGCAGCTCTCTTGTCCTGGGCTACTATTGGTCCCCTTTCTGGAGTTTTCCCCTGGTATTCTGGAAATCGATCTCTGACAGCAGCAGTGCAGTCGGGTGGGCAACGTGTTATAAGGAAGAACACCGTCCCTGCCCGTGGTCAATCTGAGGGGGCAAAACCGGAGGCGCCCCCACTGTGGCCGCATTCAGACTTCAATTTCCTTCCCAAAGGGGCTGGAAAGTGCCTGCTGAGATGTGGTGAACAGTCTAAGGGTGTTCACATGGGAGCTCAGTGAGTCCCCTCGGTTATGGAGTACAGTGTCGCCTGAATCTTGCTTCTGGACATCCACGGACAAGAAGACTGGTGACTTGTCGATTCTCTGATGCCCACCCCCAGCTCCTGGTTCCCTCTCTTGAGGCAGAAGAGCCAGGCTCAGATGATGGGACACTTTCGGAGATGCTGCTTCTGACAGGTGCCGAGCAACAGGTACTACTCCTTTCTTCTTTCCACCCTCAG
Seq C2 exon
ATCCTCCCTCATCTTCACCCATCTTTGGAAGAAGAACCTTCAGAAAGAAGATGGCTCCTGAGCAATGGGAAGCGACATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-Zfp354a:NM_009329:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.182
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCGCGGGTCTTAGG
R:
TGAGATGTCGCTTCCCATTGC
Band lengths:
208-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: