BtaINT0165362 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006428 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr7:41178306-41179540:-
Coord C1 exon
chr7:41179380-41179540
Coord A exon
chr7:41178394-41179379
Coord C2 exon
chr7:41178306-41178393
Length
986 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCGCTTTGTCTTCCCTCAGATC
3' ss Score
11.41
Exon sequences
Seq C1 exon
ACTTGGGGTGCCCAGCTTTTGCAGCTGGCGTGAGCAGCCACCCGACCTGAGGTTGGCCCAGGCAGCACCTCGGGCGAGTCCAAACCCCAAGCTGCTGTCAGGCTGTGGCAGTTCCGGAGCCTCCCGCCTGCAGCCCACGGAACCCCAGAGGCCTAGGAGAG
Seq A exon
GTGAGCGGCGGAGGGTCGGCGGAATGCGGGAGGGAAGACCCGGCCTCGGGAGGATGCGTTGGGGCGCGGGACACAGGCCCAGCAGGAGCAAGCTGGGCCTTTGTGGGCGCCAGCGGGCCGAGGGCCGGGCATCCGGGCTCCGTCCTCCTGACGCCACCGCCTCCCACAGACGTGCCCTGAACGCCAGAAGCCGGACACTTCCTCCCTTTTGGCCGGGCTCAGCCATCCTCCTGCTTCCTCCAGATAGGTTCCCCTCGCGCTACCTGCCCGGCTCCTTCCGGCGTTTGAATTGCTCTGGGCCGGCAGTGAACGTGAGAAAATAATTTCCTTCCCCTACCATCGCCGCAGCTCTCCCTAGTGACAGGCTTGTTTTGCCTGAGAAGTGAATCGCCGGCTTCCCCCAGTGGCAGAATCAGGACTGGAATCCAGGTCTCTGGTTGTCTGTACCTCGTTTCTCAAGACAGCAGCCTCCTCCGCCATAGGAGTACTGATACTTTCCCTTTCCAAAGCAGTTTTCTCTAAAAATCTGGAAATTATTTCCTTGCAAGGAGGAGGACGAGTTGGGTGGGAAGACTCGAAATGCAGAAAAGTTGTCACATATGCACGCACGGAGTTTAGAGCAGATGCCAGCCTCCCTGGCAAGTTGCTCCCACTCTGCCCTCAGTTTCCTGATCTGTAAAATGGGAGCTGACAGTGTCAACCATGCTCAGTAATGCAGGTAGTGCCTGGCACTTCTTGAGGCTCAAGGAGTTGCTGCTGCTGCTGATTGAGTCCTAGGACGTTTTTCACTGAGCCAGGGAAAGAGCTGGGCCGGGAACAGGATGACCCAGCTCCTCTCTCTGGTCCTGTCTACCCCTGGCTGCTTCTGACTTCCTTCTCTGAGGACACTTGGCATCATTCTCAGGGAGTGTAAATGATTCAGAGCTGCTGATTCAGAGGGGTGGAAAACAAGGGGCTTCCTCCTGGCTCGCTTTGTCTTCCCTCAG
Seq C2 exon
ATCTGGCTTCTGGAGACTTCACCCATCCTCAGGGGACACTGCCCAGAAAGAAGATATGGCTACTGAACAGAGGGAAGCAAGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006428:ENSBTAT00000008427:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGCCCAGCTTTTGC
R:
TGAGACCTTGCTTCCCTCTGT
Band lengths:
244-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]