HsaINT0186998 @ hg19
Intron Retention
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:11628]
Coordinates
chr5:178155991-178157703:-
Coord C1 exon
chr5:178157557-178157703
Coord A exon
chr5:178156075-178157556
Coord C2 exon
chr5:178155991-178156074
Length
1482 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGCTCCCTTTTTCTTCTCAGATC
3' ss Score
9.73
Exon sequences
Seq C1 exon
CCGGCGCGCCGCGGGGTGAGCGGCGCCGGGCCTGAGGTCGCCCAGACGCCGTCGGGGCGGAGCCGGGTCGCGAGGCTGCATCCCGGCCGGCGGTTCCGGAGCCTCGCGGCTGGGGAGGCGCGGCCCGGGACGCTCGAGCTTAGGGAG
Seq A exon
GTGAGCGTCGGCGGCAGGCCAAGCCGGTAGGAGGCGGCGCCCGGCACGGGGACTGCCTGCGGCTGCCGAGGCTCCGAAAGCCTTTGTGGGCGCTGGCGGGCACCCCCGCGTCTGTCACCGGCCCCCGCGCCGGGATCTGGACTCTCGCCCCCCCGCGGGGCGCTCCCTCGCCGTTGCTGGTGCACCCGCGTCCGGCTCGCCGTGGACGCCGGGCCTGGCGTTTCCTCCCGGGCCCGTCCTGCCCACTCCATGTGGGCCTCGCGGACTCGGGGCACCGGGACCCCGAGGGCAGGGCGGACGCAGCCGGGCCCCGGTTTCCGAGTCCGTCCCCAGGACGGCCACCCCTCCCGCCTCGGGACACCCAGCGCTTTCCTCTTCAGAGCTGGTGTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGTGAGGCCGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCAAGCCCTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAGAAACATCGTGTTAGAAATGGGATACATGGGGTCGGGCGTGGTGGCTCACGCCTGTAATCCTAGATTTTTGGGATGCCAAGGCGGGCAGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGGGCAACACGGTGAAACCTCGTCTCTACTAAAAATACAAAAATGAGCCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCGCTACTGCACTCCAGTCTGGCCAACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAGCCGTTTTCCGTGGAGTCGGGAGATGATTCGTTGGCGGGAGAGAGAGGAACCGGCTGGGAAAGGCTTGAGGCGGAGGGAAGTCGTCCCGGGGCCGTCGTGGTGGGAGTCCCGGCCCGCCTCGCAGCGGCGTGAACGGGGCAGGTGCCCCGGCGCTGCCTCAGTTTCCTGAGCGGTGCAGTGGGTGCTGGCAGTGCCAGCTGGCGCCGAGGAACTCAGCGGCGTGGGGCGAGCCCTGGCCCTGGTGGGCTCAGCGGGTCGCTGCTGCCACTGCGGCTCCAGCGTCCCCTCCGTAAGCCCCAAGCCTGTGGGGCCTGGGCCTGGCCGGGCGGCCCAGCGCTGCTCTGGTCCGCGGGCTCCTGGCTCCTCCCGAATCCCTGTGAGGGCGCGCGGGGTCCTTCTCAGCGGGAGTCGGGGTTTTAGAGCTGCGGATTCCAGGGCTGGAAAGCAGAAGGGGTTCTTCCTGGCTCCCTTTTTCTTCTCAG
Seq C2 exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131-ZNF354A:NM_005649:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.382
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)