MmuINT0179072 @ mm10
Intron Retention
Gene
ENSMUSG00000020335 | Zfp354b
Description
zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
Coordinates
chr11:50930901-50931633:-
Coord C1 exon
chr11:50931505-50931633
Coord A exon
chr11:50930986-50931504
Coord C2 exon
chr11:50930901-50930985
Length
519 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCTTTCTTCTTCCCTCAGATC
3' ss Score
12.66
Exon sequences
Seq C1 exon
CCCCTGTGAGATCTATCAGGCCGCCGGGTGTCTGTGGCTCGATTCTCTGCCCTGATCTAGCTCCCCAGTCTGAGTCTCCAAGCGTGGCAGCTGCGAGCCTTCATGAGGCGTGGCGGGAGCAGGGGGGAG
Seq A exon
GTGAGCGGCCAGGCTGGAGGACACGGAGGCCTGTGGCGACTTCAGCGTGGGCCGCCATGAGTCACTGGTCCCCTTTCTGGAGTTTTCTCTGGGGATGTGGAAATTGATCCCTTGACAGCAGCAGAGCAGTTGGGTGGGCTGCACGTGGAGTGGGCCCGTGGTCAGATCTAAACGGGTGAAAAACGTTTGTGTTCCCACTGTGGCTGCACTCTGGCCTCAGTGCACTCTGATCTGAAGGGGGTTGGCACTGCCAACTGAGCTGGGGTGAACAGCATAGGGTGATGCCTGACTCGCGGAGGCATAGTGAGTCTCCTCGGTGACATGGAGTCCAGTGTCGCCTGAGTCTTGTTTCTGAAAATCTAGAGACCAGAAGAGTGGTGACCTGTCAATTCTCTGCCGCCCGCCCCCAGCTCCCGCTTTCCGTTCTGGAAGCAGAAGCGCCAGGCTCAGCTGGTGGAACGCATTCGGAGATGCGGCTTCTGAGGGGTGCGAAGCAATCTTTCTTTCTTCTTCCCTCAG
Seq C2 exon
ATCGCATTTTTGGACACTGTACCCATCTTTGAGAAAAGCCCAGAAAGTGAGCATGGCTCCAGAGCAAAGGGAAGGGAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020335:ENSMUST00000109124:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.909
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGTGAGATCTATCAGGC
R:
CTGAGACTTCCCTTCCCTTTGC
Band lengths:
214-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types