MmuINT0179072 @ mm9
Intron Retention
Gene
ENSMUSG00000020335 | Zfp354b
Description
zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
Coordinates
chr11:50744403-50745137:-
Coord C1 exon
chr11:50745007-50745137
Coord A exon
chr11:50744488-50745006
Coord C2 exon
chr11:50744403-50744487
Length
519 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCTTTCTTCTTCCCTCAGATC
3' ss Score
12.66
Exon sequences
Seq C1 exon
GCCCCCTGTGAGATCTATCAGGCCGCCGGGTGTCTGTGGCTCGATTCTCTGCCCTGATCTAGCTCCCCAGTCTGAGTCTCCAAGCGTGGCAGCTGCGAGCCTTCATGAGGCGTGGCGGGAGCAGGGGGGAG
Seq A exon
GTGAGCGGCCAGGCTGGAGGACACGGAGGCCTGTGGCGACTTCAGCGTGGGCCGCCATGAGTCACTGGTCCCCTTTCTGGAGTTTTCTCTGGGGATGTGGAAATTGATCCCTTGACAGCAGCAGAGCAGTTGGGTGGGCTGCACGTGGAGTGGGCCCGTGGTCAGATCTAAACGGGTGAAAAACGTTTGTGTTCCCACTGTGGCTGCACTCTGGCCTCAGTGCACTCTGATCTGAAGGGGGTTGGCACTGCCAACTGAGCTGGGGTGAACAGCATAGGGTGATGCCTGACTCGCGGAGGCATAGTGAGTCTCCTCGGTGACATGGAGTCCAGTGTCGCCTGAGTCTTGTTTCTGAAAATCTAGAGACCAGAAGAGTGGTGACCTGTCAATTCTCTGCCGCCCGCCCCCAGCTCCCGCTTTCCGTTCTGGAAGCAGAAGCGCCAGGCTCAGCTGGTGGAACGCATTCGGAGATGCGGCTTCTGAGGGGTGCGAAGCAATCTTTCTTTCTTCTTCCCTCAG
Seq C2 exon
ATCGCATTTTTGGACACTGTACCCATCTTTGAGAAAAGCCCAGAAAGTGAGCATGGCTCCAGAGCAAAGGGAAGGGAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020335-Zfp354b:NM_013744:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.909
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCTGTGAGATCTATCAG
R:
TGAGACTTCCCTTCCCTTTGC
Band lengths:
215-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: