MmuINT0179155 @ mm9
Intron Retention
Gene
ENSMUSG00000042063 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
Coordinates
chr12:117285935-117293316:+
Coord C1 exon
chr12:117285935-117286077
Coord A exon
chr12:117286078-117293189
Coord C2 exon
chr12:117293190-117293316
Length
7112 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGTGTTCGTTTCTCTTTCAGGAG
3' ss Score
12.49
Exon sequences
Seq C1 exon
ACAGAGCCTTGACAATATCGCGAGTCCACATCCCGTACGCGACCTTTGTGTTGGAAAATGTGAGCGTGTTTTCCAGCTTTTGGAAGCCCCGGTGGCCCTTACGAAATCACGGGTGCTGGAGATGCAGGAGAGCCATGGAGATG
Seq A exon
GTGAGCAATGGTCGCGAGGCTGCGCGGAGGGTTGAGTAGGCGGGAGTCTGCGCTCCGAGGGGGCGCCGGGCGGGCCTGGTCGGCTCGGCCTAGGGCGGAGTTGGGCGGCTGCACGGACCTGGCGTCCTCGGGTGCCCCGGAAGGGAGGAGCAGAGCAAACACTGATTTTGCTACCAGGCCTTTGCCTTGCAGCGGCCTCTGTGTCTGCAGCCAGCAGACTGCGGGAGATGGCCTGAAGGAGCATCAGATAATCCAGTCTCCGTGGCGGAGGTTCCTGCGGGACAGCAGCGGGGCTCCCGCTCGCCTCCCAGAGTTTTCCCGTTTCCCCCTTGCGCCTGGTGGATGTACCAGAAATAGGTCAGATCCGAAACTCTTTCCCCACCCTGCAACTCTGTGTGCCATTCCCAATCAATATCAACTGATGGGTTACCGTGATGTATTTCAATCAGATGGCTTTTGACATCGTTTTTCTAAAGATTTAATGAATGGCGCTTTATCGTTGGCTTTCTTTAAGTTTTTGTATCAGTATATATTAATTATACATCCTAATGAGTTTCATTATGGCATTTTCACACATGCATATGTATTTTGAACATATCCTCCATTGTTTCTTTCCTGTCCCTCTCCCACGATAACTCCCTTCTTTCCTAGCTGCTCTAGGATAGACAAAAGTCTATCGTTTGGTAAGCCAAGGAACTTCGTTAGGGTTATTTACCGAGGGATTAATTACAGGAGCCCGGGCATATAATTAGTGGCAACAGGACACTAGAAAATATCTCTCAACCACTTACCAACTGTTCACTGCCCACAAATCCTCAGGGAGGGGTGAGGACAAGGAAGTATTGTTAGGTCCAGTCTTTTGCAGGTCTGCGCATTTAATCACATTTGCTGTCATACATGTGAGATATCCTCAGAATACCATTTTGTAGAAATTTTGCGTCTTTTGCTTCTTAACAGTTCACCCTTTCAACACCCAGGCTGGTTGTTTGTTTAAGTCTTTTGATTTGGTTTTTGTACGCTCCTCCTTTCGCCTTCTAAGCCACAGATACCTTCCCACAATGTTTTTCGGTTGAGTTTTTCCCCTTTCGTGACCCCCACCCTCAGCTTTAGTGATTTCCTGCACTTGGGCCTGGCACCTTGTGTCCACAACTGCTGTGTGCTTATTATCTAGCACACATTGACCTCTGTGCCCACTCCTTAGACAACAGCCTGAGCTTCGAGGTGCAGTGAGGGAGCAGCTGGATGCCCTCAGGCTCGTAGACTCTGACCTTAGAAGCCCTTTTGTTTGTTGTATGCATGTCTTGGTGACCAAGAACAGTATTGAAGTCAACATGGTGGAGTAGCCATTTTTTTCAACACTGTGACTTCAATCCCTTAGTGTCTGCTAGGTTATATGGTCATTCTGCTTCGTGCTTTCAAAAATAGCTGCACTGCATTTGTAGTTTAAACAGTTCTGTGCCCAGCTTTCCTTTCAAACACACCCGATGTTTACAGAGTACTTCTTTTTCTAAATTCTCCTCTCATATTACATGCCATCTGCAGTTCCCCTCCCTCCCTCCTCCCAGCCCACCCCCACTTTCCCTTTCTCCCAGATCCACTCATCCCTTGAGAAAAGAGCAGGCCTCCCAGGAATATCAGCTGAACACAGCATAATAAGTTACAGTAAGACTAGGCACATGTCAGCGCTGGATGAGGGCAACCCAGTAGGGGGAAAGGGGTCCCAGAAGAGTCAGAGACAGGCCCTGCTCCCACTGTTAGGAGTTCTACAAGAACAGCAAGCTACACAATCATAACAGATATGCAGAGGACCTAGGTCAGACCTTTATAGGCTCCCTGATGGTCACTTCAGTCTTTGTGAGCCCCTGTGAGCTCTGATCAGTTGATTCTGTGGTTCATGGGACACTTATTCGTAATGCTGGCCTGGCACCTGTTCCCTGTGTATTGAATCACTAATCCAAGTTCTTAGAATCCATCGTGTTAGGTAGCCACTGGTAGGATGTGCTGCAAAACTTCTTCTTGGAGTAAACAGCAGGTGGTGCTGTTGTAGCCCTTAGAAACCTTGCCCATCCATCTAAGCCAGAAGATGTAACATGCGTTCAGTTGCCCCTTCTCCCAGAGCCTCGACGTTCAGGATATAGTCCAATGGAAGGTGTTAACTTGGATCCTTCACTATGCACATAGGCTCCTTCTAGGAACAATAGGTAGGCCTGGAGTCAAGTCGTGTTGCCAACTTGAGAAAAGGGCCTGGAGAGTTTAGAACTCACACTGAGGCTTCCAGAAGCCCATTAATGAGTAAGGCACAGGAAAATTTAGAACTCAAGGCATGTCTGGTCTACATGTGAGACCTCATCACAAAGCAATAAAGATGCAACCTCACAAAGTTGGCGGTGAGGTGTGTGACCCAGTAGACTCAGCTACGTGAGCGGTGGCAAGTAAATGCATTCAGATGTCCACAAGAGCTGACTTAACACAGATCGGGGGCCTGAGTCACAGCCAAGTGTGTCCTTTCCTCACTTAAACCCTGAAGCTTTTTCAAAACCTACAAACTTTGTTGCATTTCTTCTCCTTGGCAGATATGAACAAAAGTGTAATCAGTCTAGTTAGGGCACCGTGCTCAGAGTAAAGCAGGGACTCCACTGAACCTGGCTTTGGAAGCCAGTGAATCCATTGGGTTTGTGTATAGGAATATGGGTACCTGCAAAGCTGCTGTGGCACTGAGAAGTCTCATTCCACAAAGTGTGTCCAGGACGTAAAAGGCTGGATCATGGCATCTTAACCTTTCACTCCTGCATGCCTTGTGCAACTGGGATGAAGGAGGATATGGTAGGCAGAGTCCCAGAATCGAGTCTCAGGATGCCCCCATCTCATCCCATCTCTTAGGGATATGAGCAGCCACATTGTCTTTGTGATAGACCTAATGATTAATGTGTTTCTTTGCTCTTTCTTCTCTTGCCTGATTGACCAGGGTTACCTTAGTCCTGGTTATCTCTGTCTTGTATTATAGTGGAAGAGATAATTGTTTCATACCACGAAACTTTATTGTTTCGCCTACTAACTTGTGCTTCTCGGTTCAGGAATCTTGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGATGGACCATGGTAACCTAAACTCCTGGGTATCTCTGTCTTGTATTATAGTGGAAGAGATAATTGTTTCATACCACGAAACTTTATTGTTTGCGCCTACTAACTTGTGACTTCTCGGTTCAGGAATCTTGAATTCTTCCATGAGCTTCCTAGTCACAGTCAGTTCTGTATACTATTCATTCCGTGGCCTGGGGCTGATGTCAGAGAAAGAACTGATAGTTACCTGAGAGCAGCATTGGAGAACTTGTGCAAGGGATGAGAACAGGAGACTAAAGCGGAGTGTAGGTTTTTCTCTGTAGATTTATAAGCTTAGAGGACTCCCTTTCTGGTTACATCTATCTTTGTGAGATAGGGGTCTTAGCTGTCAACAGCATTTGCAAACTGTATTGTGTTATGTACCGTATGTATAAAAAGGATTCTGTTGTCAGTATAGCCATCGTCTGAGCTGTGTTCTGATCTAGGCTTATAGGTCTGTGAAGAACTGAAGAAACACTAATAAAACATATGTTCGCTTGAGAATGTACCATGTGTGTGGGGATGGCCTTGATACCCAAGTATCTCCTGCTTGTTCCAATGAAACCCTAGAAATTAAGCTCCCTCTCCCTGGTGTCATGAAAGTGGTTTGTCAGAAACATGAATACATAGGTTTCCAAAACTGAGTACTTTTACAAAGTAAGCTAGTTCTATTAGCTGCTATCCACCAGGCAGTCAGATATTCCTTGACAGCTGCCATTAGCAATCACAGATTCTTTTATTATAATATGCATTATCTTTATTATAATATGCATTATCATTATAATTATGTGTGTGTGTGTGTGCGCGCGCGCCCTCGCGTGTGTATCATATAATGGCTACAGAGTTCAAAGAGGCCTTATTGCAGTCAGAGGTTAAAAAGCTGATACATTTAAAAGGCCATTATAGGCGAAGATATTAGCAGCTGTGGGTGTACACAGGTGTAAACAGTTTCATGATGGTTCTTGTAAAAGAAGCCCCTGCTCTGGTAAAGCTGGGATTGTTTATCACAGAGAGGAATTTCAGGGTGAGCCAGTATGTACCAGACTTGGAGTTTGTTAGGAAGAGGTTATAACATAAACTGGAGCATGAAGGTCAGTAGAAACAGGTTCTCTAAAAGGGGAAGATACACCCACGTGTGGACATAGACTTCTTTACAGTCTGTAATAATTGCCTTACAGTAAACAGATGTCAGTGTGTTCTGAAGTTGCACCTCAAAAGGTTGCTGAAAAACTTAAATAAGATCATAGGCCAGTTCCTGTTGTGCCCTGGCTAACATAGCTTGTGAGGAATGCATGAATAATTAGTGTTTTTAATGTAAACTGCAGTTAATAGTCTTTTGTGAAGTTCTCAGATAACATGTGGAAAAGGGCGAAGGCTGTATTTGGAGATTGGCTGTATTTAGGTCCTAAGCATTGTCCATTGGTGTTTCAGTATTTTATTTGAACTATCCGAGTATAAAGGGAACTTTGTCTCTATGAAAGCAGCTTTCACAGCAGACTCTGTTAGGTTGTAATTTGTGACTTTTATCTGAGTGGACATCAAGCAGACTCCAGGGTGAGAGGCTCCTTTTGCCTTCCTTGTTCCCTCAGTTTCCCCCATGTGGCTGGCCTGTCCGGCTTGATATTAATGAACCCAGAAGTAGAAGTGCTGAGGAAACACAAGAGCCCCACCATAGGCTCTGCTCCCTTTTTCTAAGGATCGAGATCATTCACAGGGAAGACCATAGAAAATGACACCCAGGGGAAATCTGGGATTATTCCATGATTCCTTGACACATAAACTGGGTGCTCAGGTGTCCTTACGATAGATTCCAGGTGAGCGTGTGTTACGTTGTTGATTCATCTGGACTTCTAAATTAGTTCCCAGGCCTGACTTTTCTGATACAACTTTAATATGCTCACAGGTCACTATAGTTTACAGTCTACCTTATTAAACTGATAGTTGAAAGCTGTTTTACTTGTATGACCAGTTACTAGTTTTTGCTTCGTGGTTAGCGAACAGATGAGCCACACAGTCATTTTGCTTTTTTCACTCAAAATGGAGCCACACAAGACAAGAAACTAGGAAGCCTCTATTTTACACATCATATTGTGACCTACAGAAACCTCACTTCCTAAAGTAACAGGTCTCGTAGACCAATCCACCTCCTGATCGTATACATTATATTCATTGCTTTAAGTAACCTTGGCTTTGCTAGGCTGTTCCATGCAGACAGGCTTCTGTTTTCCCTCTCTTCCTCTTTTACCTTTCTCTTTTTAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTCATTTGTTTTTATCTCCAGAGTTGGTATTGAGTACTTTACAAAGTATCAAATGGAAGGCAGAACCGTGGTCCCTCCACTCAGGTCCCCATAGTCTCCATCAGAGGTAATTCAGATTATTTCTAAAATACGTGAAGATGATTCGATCAGTCGTCAGGGATGGAAGACAAGAGATTCCTAGGAGAACGTGTCTCTGGTTAGGGGCAGTGGAACCCCATATTCAGAATTTGGAGATGTTTGTTTCTCTACCTTTCTTACTTCTGGTTAGTATGGTTTTGTTTGTTTTTATCTTAAGCTACTTCCTCTTCTAATATGAAATAGACATGGTGCAATATATTTATTCCTGCTCAATATCACATATACACAATTCTTTACCACTCTTACGTTTAGCCAAAGAAACAAATCCATTTCCAAGTATGTTCAAATTAGACCTTATAATACAAAATAGTTAGAAAATGACTAAAAAGCTACAGCTTTGATTGTAGTTTGACACCCTTAAATACATTCTCAGTGGTATTATATTTTTAAAAGTATTTAAAAAAAAAAAAACAGAATCGTCCTCAAATAGAATATAGTTCAGTTTGCACTGTTGACTTCTGTGGCATTATGGGTGGCCTTGGATTTATGTCCTTCTACCTCCACCTACCAACTGCTAGGATTAAAAGTGTGTGCCCCCACATCTGGATTAAGGGTACTGGTATATCAACGTGTGCATGTGTGTGTGTTTTAGTCTGTCCTCAGGAGGAACCCAGGGCCTTATGTACTATGTATCACTGGGAAATACACACAGCCATTGTGTATTGTTTTGGATTTATGGCTACTATTTTTATCTTTAGAAATAAAGTATAAATATTATTTGATCAGTTTTCTTTGCTGCCTTTTTAATATATTTCCATTCCCAACAACATGGGAAAACTGCTTGAAGCTTATTTTAGTTTTTTTAACTTTACGTTTCCATCTTAATCCTGGACCAAGTGCATTTGGTTAGAACCTAGGTTTGACCATTTGCCATTTTTTGACAAAATAATGTAGGAGGAAAAAAAAAAACCACATAAAACCATTCCCATGAAAAAAATTATTCTAGCTATACATCCTGTTATAATAAAATGCATGATCACTTTAAAAATCAAGTTGCACCTCACGGCTGCTAATGAGCAGCCTTGGACACTGACGTCAGCATTACTACTGAGCTGTGTCCTCAGGAACTCTGACTCCAGTCCAGAACACCTGAATAAGAATCAGAATCCGTCTAGTTCACTGTGGCTTTCTAGTCTCATTTCCTCTGTTACACAGCAGATAGTGTTGTCTGTGAGTTTATACAGCGCATGCTCTGACAGTAATGCTCTGCTACCTAAAGTCATACAATTGTAATATTTACACTGGTTTGGCAGTATAAATATAAAAAGGCCCTTGCGGAACAATTCAGTTTCCTGAATCATCACCATTCTAACTCTCACTTCCTCTTGGCTGACGCAGAACTCGGATCATCCTGCATAACAGAACTCTGACCATCTTGGATAACACAGAACTCTGACAGTGTGGTATTTGTGTTCGTTTCTCTTTCAG
Seq C2 exon
GAGCAGTTGACCTTCCGCGACGTGGCCGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTATAGGGATGTGATGGTAGAGAACTACAGAAACCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042063-Zfp386:NM_019565:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=52.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: