MmuINT0179155 @ mm10
Intron Retention
Gene
ENSMUSG00000042063 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
Coordinates
chr12:116047724-116054848:+
Coord C1 exon
chr12:116047724-116047866
Coord A exon
chr12:116047867-116054721
Coord C2 exon
chr12:116054722-116054848
Length
6855 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGTGTTCGTTTCTCTTTCAGGAG
3' ss Score
12.49
Exon sequences
Seq C1 exon
ACAGAGCCTTGACAATATCGCGAGTCCACATCCCGTACGCGACCTTTGTGTTGGAAAATGTGAGCGTGTTTTCCAGCTTTTGGAAGCCCCGGTGGCCCTTACGAAATCACGGGTGCTGGAGATGCAGGAGAGCCATGGAGATG
Seq A exon
GTGAGCAATGGTCGCGAGGCTGCGCGGAGGGTTGAGTAGGCGGGAGTCTGCGCTCCGAGGGGGCGCCGGGCGGGCCTGGTCGGCTCGGCCTAGGGCGGAGTTGGGCGGCTGCACGGACCTGGCGTCCTCGGGTGCCCCGGAAGGGAGGAGCAGAGCAAACACTGATTTTGCTACCAGGCCTTTGCCTTGCAGCGGCCTCTGTGTCTGCAGCCAGCAGACTGCGGGAGATGGCCTGAAGGAGCATCAGATAATCCAGTCTCCGTGGCGGAGGTTCCTGCGGGACAGCAGCGGGGCTCCCGCTCGCCTCCCAGAGTTTTCCCGTTTCCCCCTTGCGCCTGGTGGATGTACCAGAAATAGGTCAGATCCGAAACTCTTTCCCCACCCTGCAACTCTGTGTGCCATTCCCAATCAATATCAACTGATGGGTTACCGTGATGTATTTCAATCAGATGGCTTTTGACATCGTTTTTCTAAAGATTTAATGAATGGCGCTTTATCGTTGGCTTTCTTTAAGTTTTTGTATCAGTATATATTAATTATACATCCTAATGAGTTTCATTATGGCATTTTCACACATGCATATGTATTTTGAACATATCCTCCATTGTTTCTTTCCTGTCCCTCTCCCACGATAACTCCCTTCTTTCCTAGCTGCTCTAGGATAGACAAAAGTCTATCGTTTGGTAAGCCAAGGAACTTCGTTAGGGTTATTTACCGAGGGATTAATTACAGGAGCCCGGGCATATAATTAGTGGCAACAGGACACTAGAAAATATCTCTCAACCACTTACCAACTGTTCACTGCCCACAAATCCTCAGGGAGGGGTGAGGACAAGGAAGTATTGTTAGGTCCAGTCTTTTGCAGGTCTGCGCATTTAATCACATTTGCTGTCATACATGTGAGATATCCTCAGAATACCATTTTGTAGAAATTTTGCGTCTTTTGCTTCTTAACAGTTCACCCTTTCAACACCCAGGCTGGTTGTTTGTTTAAGTCTTTTGATTTGGTTTTTGTACGCTCCTCCTTTCGCCTTCTAAGCCACAGATACCTTCCCACAATGTTTTTCGGTTGAGTTTTTCCCCTTTCGTGACCCCCACCCTCAGCTTTAGTGATTTCCTGCACTTGGGCCTGGCACCTTGTGTCCACAACTGCTGTGTGCTTATTATCTAGCACACATTGACCTCTGTGCCCACTCCTTAGACAACAGCCTGAGCTTCGAGGTGCAGTGAGGGAGCAGCTGGATGCCCTCAGGCTCGTAGACTCTGACCTTAGAAGCCCTTTTGTTTGTTGTATGCATGTCTTGGTGACCAAGAACAGTATTGAAGTCAACATGGTGGAGTAGCCATTTTTTTCAACACTGTGACTTCAATCCCTTAGTGTCTGCTAGGTTATATGGTCATTCTGCTTCGTGCTTTCAAAAATAGCTGCACTGCATTTGTAGTTTAAACAGTTCTGTGCCCAGCTTTCCTTTCAAACACACCCGATGTTTACAGAGTACTTCTTTTTCTAAATTCTCCTCTCATATTACATGCCATCTGCAGTTCCCCTCCCTCCCTCCTCCCAGCCCACCCCCACTTTCCCTTTCTCCCAGATCCACTCATCCCTTGAGAAAAGAGCAGGCCTCCCAGGAATATCAGCTGAACACAGCATAATAAGTTACAGTAAGACTAGGCACATGTCAGCGCTGGATGAGGGCAACCCAGTAGGGGGAAAGGGGTCCCAGAAGAGTCAGAGACAGGCCCTGCTCCCACTGTTAGGAGTTCTACAAGAACAGCAAGCTACACAATCATAACAGATATGCAGAGGACCTAGGTCAGACCTTTATAGGCTCCCTGATGGTCACTTCAGTCTTTGTGAGCCCCTGTGAGCTCTGATCAGTTGATTCTGTGGTTCATGGGACACTTATTCGTAATGCTGGCCTGGCACCTGTTCCCTGTGTATTGAATCACTAATCCAAGTTCTTAGAATCCATCGTGTTAGGTAGCCACTGGTAGGATGTGCTGCAAAACTTCTTCTTGGAGTAAACAGCAGGTGGTGCTGTTGTAGCCCTTAGAAACCTTGCCCATCCATCTAAGCCAGAAGATGTAACATGCGTTCAGTTGCCCCTTCTCCCAGAGCCTCGACGTTCAGGATATAGTCCAATGGAAGGTGTTAACTTGGATCCTTCACTATGCACATAGGCTCCTTCTAGGAACAATAGGTAGGCCTGGAGTCAAGTCGTGTTGCCAACTTGAGAAAAGGGCCTGGAGAGTTTAGAACTCACACTGAGGCTTCCAGAAGCCCATTAATGAGTAAGGCACAGGAAAATTTAGAACTCAAGGCATGTCTGGTCTACATGTGAGACCTCATCACAAAGCAATAAAGATGCAACCTCACAAAGTTGGCGGTGAGGTGTGTGACCCAGTAGACTCAGCTACGTGAGCGGTGGCAAGTAAATGCATTCAGATGTCCACAAGAGCTGACTTAACACAGATCGGGGGCCTGAGTCACAGCCAAGTGTGTCCTTTCCTCACTTAAACCCTGAAGCTTTTTCAAAACCTACAAACTTTGTTGCATTTCTTCTCCTTGGCAGATATGAACAAAAGTGTAATCAGTCTAGTTAGGGCACCGTGCTCAGAGTAAAGCAGGGACTCCACTGAACCTGGCTTTGGAAGCCAGTGAATCCATTGGGTTTGTGTATAGGAATATGGGTACCTGCAAAGCTGCTGTGGCACTGAGAAGTCTCATTCCACAAAGTGTGTCCAGGACGTAAAAGGCTGGATCATGGCATCTTAACCTTTCACTCCTGCATGCCTTGTGCAACTGGGATGAAGGAGGATATGGTAGGCAGAGTCCCAGAATCGAGTCTCAGGATGCCCCCATCTCATCCCATCTCTTAGGGATATGAGCAGCCACATTGTCTTTGTGATAGACCTAATGATTAATGTGTTTCTTTGCTCTTTCTTCTCTTGCCTGATTGACCAGGGTTACCTTAGTCCTGGTTATCTCTGTCTTGTATTATAGTGGAAGAGATAATTGTTTCATACCACGAAACTTTATTGTTTCGCCTACTAACTTGTGCTTCTCGGTTCAGGAATCTTGAATTCTTCCATGAGCTTCCTAGTCACAGTCAGTTCTGTATACTATTCATTCCGTGGCCTGGGGCTGATGTCAGAGAAAGAACTGATAGTTACCTGAGAGCAGCATTGGAGAACTTGTGCAAGGGATGAGAACAGGAGACTAAAGCGGAGTGTAGGTTTTTCTCTGTAGATTTATAAGCTTAGAGGACTCCCTTTCTGGTTACATCTATCTTTGTGAGATAGGGGTCTTAGCTGTCAACAGCATTTGCAAACTGTATTGTGTTATGTACCGTATGTATAAAAAGGATTCTGTTGTCAGTATAGCCATCGTCTGAGCTGTGTTCTGATCTAGGCTTATAGGTCTGTGAAGAACTGAAGAAACACTAATAAAACATATGTTCGCTTGAGAATGTACCATGTGTGTGGGGATGGCCTTGATACCCAAGTATCTCCTGCTTGTTCCAATGAAACCCTAGAAATTAAGCTCCCTCTCCCTGGTGTCATGAAAGTGGTTTGTCAGAAACATGAATACATAGGTTTCCAAAACTGAGTACTTTTACAAAGTAAGCTAGTTCTATTAGCTGCTATCCACCAGGCAGTCAGATATTCCTTGACAGCTGCCATTAGCAATCACAGATTCTTTTATTATAATATGCATTATCTTTATTATAATATGCATTATCATTATAATTATGTGTGTGTGTGTGTGCGCGCGCGCCCTCGCGTGTGTATCATATAATGGCTACAGAGTTCAAAGAGGCCTTATTGCAGTCAGAGGTTAAAAAGCTGATACATTTAAAAGGCCATTATAGGCGAAGATATTAGCAGCTGTGGGTGTACACAGGTGTAAACAGTTTCATGATGGTTCTTGTAAAAGAAGCCCCTGCTCTGGTAAAGCTGGGATTGTTTATCACAGAGAGGAATTTCAGGGTGAGCCAGTATGTACCAGACTTGGAGTTTGTTAGGAAGAGGTTATAACATAAACTGGAGCATGAAGGTCAGTAGAAACAGGTTCTCTAAAAGGGGAAGATACACCCACGTGTGGACATAGACTTCTTTACAGTCTGTAATAATTGCCTTACAGTAAACAGATGTCAGTGTGTTCTGAAGTTGCACCTCAAAAGGTTGCTGAAAAACTTAAATAAGATCATAGGCCAGTTCCTGTTGTGCCCTGGCTAACATAGCTTGTGAGGAATGCATGAATAATTAGTGTTTTTAATGTAAACTGCAGTTAATAGTCTTTTGTGAAGTTCTCAGATAACATGTGGAAAAGGGCGAAGGCTGTATTTGGAGATTGGCTGTATTTAGGTCCTAAGCATTGTCCATTGGTGTTTCAGTATTTTATTTGAACTATCCGAGTATAAAGGGAACTTTGTCTCTATGAAAGCAGCTTTCACAGCAGACTCTGTTAGGTTGTAATTTGTGACTTTTATCTGAGTGGACATCAAGCAGACTCCAGGGTGAGAGGCTCCTTTTGCCTTCCTTGTTCCCTCAGTTTCCCCCATGTGGCTGGCCTGTCCGGCTTGATATTAATGAACCCAGAAGTAGAAGTGCTGAGGAAACACAAGAGCCCCACCATAGGCTCTGCTCCCTTTTTCTAAGGATCGAGATCATTCACAGGGAAGACCATAGAAAATGACACCCAGGGGAAATCTGGGATTATTCCATGATTCCTTGACACATAAACTGGGTGCTCAGGTGTCCTTACGATAGATTCCAGGTGAGCGTGTGTTACGTTGTTGATTCATCTGGACTTCTAAATTAGTTCCCAGGCCTGACTTTTCTGATACAACTTTAATATGCTCACAGGTCACTATAGTTTACAGTCTACCTTATTAAACTGATAGTTGAAAGCTGTTTTACTTGTATGACCAGTTACTAGTTTTTGCTTCGTGGTTAGCGAACAGATGAGCCACACAGTCATTTTGCTTTTTTCACTCAAAATGGAGCCACACAAGACAAGAAACTAGGAAGCCTCTATTTTACACATCATATTGTGACCTACAGAAACCTCACTTCCTAAAGTAACAGGTCTCGTAGACCAATCCACCTCCTGATCGTATACATTATATTCATTGCTTTAAGTAACCTTGGCTTTGCTAGGCTGTTCCATGCAGACAGGCTTCTGTTTTCCCTCTCTTCCTCTTTTACCTTTCTCTTTTTAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTCATTTGTTTTTATCTCCAGAGTTGGTATTGAGTACTTTACAAAGTATCAAATGGAAGGCAGAACCGTGGTCCCTCCACTCAGGTCCCCATAGTCTCCATCAGAGGTAATTCAGATTATTTCTAAAATACGTGAAGATGATTCGATCAGTCGTCAGGGATGGAAGACAAGAGATTCCTAGGAGAACGTGTCTCTGGTTAGGGGCAGTGGAACCCCATATTCAGAATTTGGAGATGTTTGTTTCTCTACCTTTCTTACTTCTGGTTAGTATGGTTTTGTTTGTTTTTATCTTAAGCTACTTCCTCTTCTAATATGAAATAGACATGGTGCAATATATTTATTCCTGCTCAATATCACATATACACAATTCTTTACCACTCTTACGTTTAGCCAAAGAAACAAATCCATTTCCAAGTATGTTCAAATTAGACCTTATAATACAAAATAGTTAGAAAATGACTAAAAAGCTACAGCTTTGATTGTAGTTTGACACCCTTAAATACATTCTCAGTGGTATTATATTTTTAAAAGTATTTAAAAAAAAAAAAACAGAATCGTCCTCAAATAGAATATAGTTCAGTTTGCACTGTTGACTTCTGTGGCATTATGGGTGGCCTTGGATTTATGTCCTTCTACCTCCACCTACCAACTGCTAGGATTAAAAGTGTGTGCCCCCACATCTGGATTAAGGGTACTGGTATATCAACGTGTGCATGTGTGTGTGTTTTAGTCTGTCCTCAGGAGGAACCCAGGGCCTTATGTACTATGTATCACTGGGAAATACACACAGCCATTGTGTATTGTTTTGGATTTATGGCTACTATTTTTATCTTTAGAAATAAAGTATAAATATTATTTGATCAGTTTTCTTTGCTGCCTTTTTAATATATTTCCATTCCCAACAACATGGGAAAACTGCTTGAAGCTTATTTTAGTTTTTTTAACTTTACGTTTCCATCTTAATCCTGGACCAAGTGCATTTGGTTAGAACCTAGGTTTGACCATTTGCCATTTTTTGACAAAATAATGTAGGAGGAAAAAAAAAAACCACATAAAACCATTCCCATGAAAAAAATTATTCTAGCTATACATCCTGTTATAATAAAATGCATGATCACTTTAAAAATCAAGTTGCACCTCACGGCTGCTAATGAGCAGCCTTGGACACTGACGTCAGCATTACTACTGAGCTGTGTCCTCAGGAACTCTGACTCCAGTCCAGAACACCTGAATAAGAATCAGAATCCGTCTAGTTCACTGTGGCTTTCTAGTCTCATTTCCTCTGTTACACAGCAGATAGTGTTGTCTGTGAGTTTATACAGCGCATGCTCTGACAGTAATGCTCTGCTACCTAAAGTCATACAATTGTAATATTTACACTGGTTTGGCAGTATAAATATAAAAAGGCCCTTGCGGAACAATTCAGTTTCCTGAATCATCACCATTCTAACTCTCACTTCCTCTTGGCTGACGCAGAACTCGGATCATCCTGCATAACAGAACTCTGACCATCTTGGATAACACAGAACTCTGACAGTGTGGTATTTGTGTTCGTTTCTCTTTCAG
Seq C2 exon
GAGCAGTTGACCTTCCGCGACGTGGCCGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTATAGGGATGTGATGGTAGAGAACTACAGAAACCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042063:ENSMUST00000073551:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types