MmuINT0179297 @ mm9
Intron Retention
Gene
ENSMUSG00000055341 | Zfp457
Description
zinc finger protein 457 [Source:MGI Symbol;Acc:MGI:2664334]
Coordinates
chr13:67396683-67397367:-
Coord C1 exon
chr13:67397241-67397367
Coord A exon
chr13:67396779-67397240
Coord C2 exon
chr13:67396683-67396778
Length
462 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCCCTTTTCCCACAAATAGGTC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GATATGTTGTCATTCTGGGATGTGGCAATATATTTCTCTGCAGAGGAGTGGGATTGCCAAGGTCCTGCTCAGTGGGATCTGTACAGGGATGTGACATTGGAGAATTACAGCAACCTTGTGTTCCTGG
Seq A exon
GTGAGGATACCTTCTGTGATGAACTCTTAATTAACTGTCAGCATGAACGTTGCTCCCTTTGTACAGTACCTCATGGAGCTTGTGCTTCCAACAGGGAGGTTCAGAGGGCTACTCTTAAGGAAAATTAATATTATTTATATAGCTTACAAATATTTCTTCTTATGTTCATACCAACCCCTTAAATGTATTGTTTGTATTAGAACATAAGTGGTATGCCTTAAAGAAACTGTCACACACTTAGGTTTTAGAAGTTCTCCCCGTAACTGAGGGATGTGAAGCATGGAACCCACGAACTCTAAGTTCCCCCTAAGCATTCTGATGTGCTCAGCAGAAAACACATGAGAAGTAATCCTCTATACTCCTCTTTTTGTGCCTTCTCATCCTTGTACACACAATCTTGGAGGGACATCTTATTTCCCAAGAGAACATAGTAACAATGTTGTCCCCTTTTCCCACAAATAG
Seq C2 exon
GTCTTGCTTCTTCTAAGCCATACCTGGTCACATTTCTGGAACAAATACAAGAGCCTTCAGATGTGAAGAGACAAGCGGCCATCACTGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055341-Zfp457:NM_001003666:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGTTGTCATTCTGGGATGTGGC
R:
CTGGGTGCACAGTGATGGC
Band lengths:
222-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: