MmuINT0179432 @ mm10
Intron Retention
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16090808-16092361:+
Coord C1 exon
chr7:16090808-16090911
Coord A exon
chr7:16090912-16092285
Coord C2 exon
chr7:16092286-16092361
Length
1374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CACATCTCCTGTCCTTCCAGGTT
3' ss Score
10.93
Exon sequences
Seq C1 exon
TGATGGAGCTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTGTTCAG
Seq A exon
GTGAGACCCTAGGCACCCTGTACACCTGAGGCTGGGCTTTCTGGGACTTGGATGGCCCAGCTGAGGGAAGGTGAAGATCTAAGTCTGCAGAGTACGGGAGTAAAGGCTGGTCAGTTACAGGATTTGTCTGTCAATTATAGATCCTCTAGGACTGCAGTTCTCAACCTGTGGGCCATGACCATTTTGGAGTTACCCAAAGACCAATTAAAAACAAAGATATTTATATTATGATTCATAACAACAGCAAAACTACAGTTACAAAATAACACTGAAAATAGTTTTATGGTTGGAGGTCACCACAACATAAGGAACTGTATTAAAAGATCACAGCATTCAGAAGGTTGAGAACCACTACTCCGGGAGAAAGGGTTCTGGGACAGTGTAGGAGGAGCAGTGTTTAAGACCTGAGACTTAGTCCTGGACCATGCTTTCTGCCAAGCTGAGGGGCAGTGTCTGACGTGTGTATACTGAGTACCACTGGAACAGTGTCTGACATGTGTATACTGAGTACCACTGGGACTCAACCATGCAGGGCTCTGCTCTTGCTATTAATACTCCATTGTCTTATCTACGGAGTCTTTAGACGTTCTGAATGGAAATCTTTGGGAGGTTTGGTTTTGTTTTTGTTTTCAGAGTGTCCCTGCCTGTCCTGGAAATTACTCTGTATCCCAGTTTGGCTTTGAACTAAGAGATCCACCTGCCTCTATCTCCCAAGTGCTGGGATTAAAGGTGTGACCACCACTAGGTGGAAATCCTCATTTTTGTTTTATATCAGATCCTAAAAAAGGTCTAGTCCTCACTGGGATTAGAGTAGCCCATACCTCACAGGGCTTGTAATTCGAGAGTCAAAAGCTTTAAAAGTATATTGCTGAGGGATGTGGTTGCTCACACCTGTGCTTCCAGCACTTGGAATAAGTTTAAGACCAGCCTGGGTTACAGTATGAAGTTCTGTCTCAAAAGTCAAAGGCCAGTGGCATAGCTCATATGTAAGGTCCAGGCTCCATCCCCGGCTGAGCTGAAAGGAAAAGGCAGCCCAGGATGAAGTGCAGAAGAGGGAATAAAACGGAGTGCCCACTGAGATGGCACTCTTCTAGGCAGCAGCCTCTGGTGGGTAGGAGAATGTGCCTCCCAAACCCACACACAGTATTCTTCATGAAAATGTCATATTGTGAAGGCAAATATGATATTCAAAGGGGTGCTTAGTGAAGTCATCATGGGCCAACAAATTTTCCACCAGCATAAGGACCAAACACCTGTAGGTCACCTTGAACAAGTTGACTATAGAGACATTTGTTTTTCAATGAAAGAAAGAAGAATGGAGACAGTCCCTGATTCCCATGCCTTGTGACTGGCCCACATCTCCTGTCCTTCCAG
Seq C2 exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCACTGGCTGACTATCGATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796:ENSMUST00000209369:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types