HsaINT0187572 @ hg38
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47529577-47531745:-
Coord C1 exon
chr19:47531642-47531745
Coord A exon
chr19:47529653-47531641
Coord C2 exon
chr19:47529577-47529652
Length
1989 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCGCTCCTCTTGTTCCAGGTC
3' ss Score
11.4
Exon sequences
Seq C1 exon
TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAG
Seq A exon
GTGAGGAACAGCAAGGGGACCCTCCCTGCTTTCCTGGGGCCCAGGGTTCTAGGTGCATGTGACGTGCTGTCTGCTTGGGGGTTCAGAGCGGATGGAAGCTGGAAGAAGGCCGCCCATCCTCCTCCACAGCGGCTTTGGGATTGCAGTGGTCCTTGTGCACGGACTGTAGGGGAATGCTAAGACGTGGGCCCAATTCATAGCTACTTGTCTGGGGCAACAATCAAGCGCAGGGGTTCCTCTGAGATCTCAGGGGGCACTGGAGAAGGGAAGCCCCAAAGACCCAGCTCAGGCCCTGCATTCATCTACTTAATTCCTTGAGTTTTAGCTTTCAATTGAAAACTTATATATACAAACCTCTGATGCAACATAAATGCCTCTACCTACTCCAAGGACCCCCCCCCCCCCCCCCGCTCACAATTCTGGGTGTTAGAAAGTATATTAAAAGTCTAACTGTGAGGAGCGGGAGAGGAAGAGCCACATTGCCTGTGTTAAGGATCTAAGAGTCATGCCATGGTCTTGCTTTTCACCAACCTGAGAGGCAGTGTCTGGCATATAGCAGGTCCTCAGCAGAGTGGCAGTACATATTTATTGGGTACCTGCTGGTTGCCTGTACTGTAGGCACTGGGGCCAGGGCCAGCTGAGGGGCTCCACGCTTGGTTTAATGCTCTGCTGTCTCTGTCTTGAAATTCTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACCTGAGCTCAGGAGTTCGAGACCAGCCTGGACAACATGGTAAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGTGGGCGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGTGCAGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCGTCTCAAAAAAGAAAAAAAAAGAAAAGAAATTCTTAATACTTTTTAAACAAGGAGTCCTGCATCTTCATTTTGCAGTGGGCCCCACAAATTATGCAAACCCTGCAATGATGGCTTACACTTGTGATTGAGATAAAATCCCTGCCCTCAGGGGGCTTACATTTTAGGAAAGTCAAATTGTTAGCTAGGCCAGGCGCATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGGGTGGATCACCTGAGGTCGTGAGTTCGAGACCAGCCTGGCTAACATGGTAAAATCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCAGGGAGTGGTGGCAGATACCTGTAGTCCCAGCTAGTTGGGAGGCTGAGGCAGGAGAATCACTTGAACTGGGGAGGTGGAGGCTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAGAAAAAACAAAGAAAATTGTTAGCTAGCTGGGTACAGTGGTACCCACCTGTATTCCTGGCTACTTGGGAGGCAGAGGCTGAAGGAGCCCAGAAATTGGAGCTCAGCCTGGACAACATAGTGAGACCTCATCTTTAAAAATAAAATGTTTTCAATTGTTAGCTATTGACTAGTGCTATGAAGAAAATAAAAATGGGGCCCTACGCAAGGGTCATACTCCTCAAAATGCCAGTCCCTGAGGGAGTAAGGAGCTTGTGCCAGAATAAATCCACACACAGTCTCCTTCGTCAGGATAGGCTTGCTGTGAAAAAATAACTTCAGCTGCATTCAGTGGTGTGCCTGGTGACACGGTTGATGCACGCACAGACAGTTCACAGGCTGGTGGCCCATCCAGGGCAACTTTGAATAGCCCTGGGACAGGCAGTGTCTTCAGGGACAGCCGCAAGTGTTTTTCAGATGAATGGGAGGATGCCTGTGGTCCTCTTCCCCCACCTGGTCCTGGGCAGCCTGTCGCTCCTCTTGTTCCAG
Seq C2 exon
GTCGCCCTGGAGACTCTTCTGCTCCGAGGGCCCCACAAGCCACGGACACACCTGCTCGCTGACTATCGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156:ENST00000391901:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains