GgaINT0060214 @ galGal3
Intron Retention
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28314185-28315217:+
Coord C1 exon
chr5:28314185-28314294
Coord A exon
chr5:28314295-28315141
Coord C2 exon
chr5:28315142-28315217
Length
847 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTGTGTTGTTTATTTTAGGGG
3' ss Score
11.57
Exon sequences
Seq C1 exon
GAATAGTGGAAAGCCTGCTAGCTGCTGCCTGCTCAAGCATTTTTCCTGGGGGTGGAACCAACCAGGAGCTGGCACTGCATTTCTTACATGAAGAAAAGGGAAGCGTTCTG
Seq A exon
GTAAGTCTTCCCACCTTTTTGCCTTGATGCGTTGAAAGATTTTAATGAAGGCCAGGTGACCTGTTATTAGATGAATGGAAACCCCCTGAAGACTCTGTCCTTTGCTTCTAGCTCACACTGCTTAGTGTCCCTTGGAGATGTTGCTGTCCCTAAAGTGTTCTTCCTGATGTACGCTACCATGTTCACTCTCTATTGTTCATATTTCAAGCTTTAAACTTTTGGCTTTTTAACAGACTGTCAATCTAGTAGGGTGAGTAGGATGAGACTGTCTAATGAATTTTAAATGTTGTCTTAAATGTAAGCTGAGAGGCTTACCGCTTGTCAGTGATAGCCAAAATTTAGTGGATAGTTGTATGGGAACTGTTGAGTCACGGCCTGAACCACTGATTGAGCACCTGGGGAAAGGACCTGGTCAGCCTTGGGAGCACAGGTGAAGGCAATTCACATGTGTGACCAAAAGGGGTGGAGCCTGCCTGCACCTCTCTTAGACCTCATTTAAGGGCTGACTGCCACTGGGGAAGGATCTCTGGTTGGAGATCCCTCTCTTGTGGAGTTTCTATTGCAAGCCTAGATCTTCAAAGATGGCTGAAGACTTATTCTTTTGTAACGCCTTTCTACTGTGCTAGTCCCTTTGTCATAACATCTTTTGTATCACCACTCCATCACATTGATCTTTCTGATTGTTACAGCAGTCAAGAATGTGAATTTAAAGTTCTCCCATTTCATGTCACAGATACTAACTGTGATGTAGGAGAAAAAAAGAACTTCTTTTCAATTAGCTTACCAGAAAGGAGTGGATTAACAATTACCTATTCTTTGTTTTAAGTTTTTGTGTTGTTTATTTTAG
Seq C2 exon
GGGGCTCTGTCCAAGCTGCTATTGAAGGGGCCAGTACGATCATCTACCCATCCTCTGGCAGATTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282:ENSGALT00000015102:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(21.7=35.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAAAGCCTGCTAGCTG
R:
TGTGTAGTGATAATCTGCCAGAGG
Band lengths:
182-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]