RnoINT0054400 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107642820-107643632:-
Coord C1 exon
chr6:107643529-107643632
Coord A exon
chr6:107642896-107643528
Coord C2 exon
chr6:107642820-107642895
Length
633 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGCCCTTTCTTTCCCTCCAGGAG
3' ss Score
13.73
Exon sequences
Seq C1 exon
TGGATGACCTGCTGACGGCCGCCTGTTCAAGTATTTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTG
Seq A exon
GTAAGAAAGCCTCGTTAAATTAGGGGGTGGGGGGATCCTTTAAGAAAGCAGGTAGATTTTTCCCTACCTGCTGCTAGAATCAGGCTTGGTGGTATAAAATTATATTAATTTATAGTGTGCATGTGTTTCTTTTTTTTCCTCCTAACTCCTCCCCACCCCCCAATCATGACTGTCTACCTTGCCTTGGCCTCCTCGGTACGGGAATGACTTGGCATGGTGATTTGTGGCACCTATGAGGGCTCTGAGCAAGGAAGAGGCTACTGGAGCTTGGCCTAAGGGAACTCTAGTCTTCAAACCCTGGCTGGGTGTGCAAGGTCCTACTGTTGAATCTAGTCCTTGATTCTAGACCAGTAGATTCCCCCACTCTCAGGCAGGACTGTCACCGAGGGCATTCTCTGCCCAGACGACTCACTTTGATGGCCGTGGTTCCCTTAAAGTGTTCCTGCAATGGTCTCATGACTTGAATCCTCAGAGGTCCACTTCTGAGTTTTGCCTTTCTCTCCCACATGCCCTGTCTCTCAGCAGTTAGGTTAGGCGAGAGTAAGTGCCTACTCTACCCAGACAGTGGCCTGGGCCACTCAACCTTCACTGTGGCTCTTCCCAGCTTCCTGACTGCCCTTTCTTTCCCTCCAG
Seq C2 exon
GAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCCCCACAATCACCCACTGGCTACCTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]