DreINT0062596 @ danRer10
Intron Retention
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25991860-25992686:-
Coord C1 exon
chr20:25992583-25992686
Coord A exon
chr20:25991936-25992582
Coord C2 exon
chr20:25991860-25991935
Length
647 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ATTATTTTTTAATTCTGTAGGAA
3' ss Score
8.43
Exon sequences
Seq C1 exon
TTGATAATCTGATGAACCTGGTCTGTTCCAGTGTAATGTATGGGGGAGGGACAAACACAGAGCTCGCAATGCACTGCCTGCATGAGTGCAAAGGTGATGTCATG
Seq A exon
GTGAGCTCAGAATAATGTTCAACAACATCTTTCAAGACAAATGTATTTGTGAATTATTCTGCTTTGTGTCTAATGCAATAGATTTTGTTGAATTTAAAGGACTGTCACTGCTGTTTAAAAGTTTTGGGTCTGTAAATATTTTGAAATGCTGTTGAAAGATTTATTTTATGCTTAATACGGCTACATTTATCTATTAAAATACTAATTCAGCAAAGCAGTTAAATTGAAATGTTATTACAACTTATAATTCTGTTATTCTTTTATAGTACAATTTTTTCCTTGAAAAACACTCTTCAATGTCACATGATATTTCAGAAATGATTCTAATATGATGATTTGTAGCTCTTTTACACTTTATGAAACATTTATTTAATTGCTATTTTAATTTTCCATTTCCCCAATTTCAGCAGTGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTATCCATCTATCCATCTATCCATCCATCCATCCATCCATCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTATATGATTTCTGGAGAAACAATTATTTTTTAATTCTGTAG
Seq C2 exon
GAAGCTTTGGAAATGATGATGCTGAAAAATCCCATCTTCTCCTGGAACCACCAACTAGCCAATTACCATTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445:ENSDART00000142611:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(20.4=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]