BtaINT0055762 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85524950-85525584:-
Coord C1 exon
chr10:85525481-85525584
Coord A exon
chr10:85525026-85525480
Coord C2 exon
chr10:85524950-85525025
Length
455 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTTCCTCACTTCCCTTTCAGGAA
3' ss Score
13.47
Exon sequences
Seq C1 exon
TGGAAGACCTGCTGACAGCTGCCTGCTCCAGCATTTTCCCTGGAGCCGGCACCAACCAGGAGCTGGCCCTGCACTGTCTGCACGAGTCCAGGGGAGACATCCTG
Seq A exon
GTGAGACCCTGCTCCCCGGTGGAGGAGGGCCCCTTGGGGAGGCTGGCAGGGAGCTGTGTCTCTGGTCCAGGAGCCAGGCCTGTCAGCGAGCTGATTGGAGGCAGGCGGGAGGGTCTGACCAAGGTGGGGATGGTAGGGGGTCGGCCCAAGGGAGCCCTGGTTCTGGACTCGAGACTTCCCTGTGCAGGGTCCGCTCCAGTCTCTGGGTAGTGGGTCCCCCACCCCTCAGACAGGGCTGTCCACTGAGGACCTTCTCCATCTGTGACTGCCTCCCTTGGGGACCAGGTGTTCTTTCTTGAGACACCCCGAGTGGCCCAACCCCAGTGACCTTGCCCTCCTGCCAGACCTCTTGCCCCTTCGCAGTTAAGAGTTAAGTAATCACCCTACTCAGAGTCCTGGATTTTGGCCACTGAGAACCTGTCAGGGCCCTGACCTTTTCCTCACTTCCCTTTCAG
Seq C2 exon
GAAACGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGTCCCCATAACCACCCGCTGGCAACTTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development