MmuINT0179434 @ mm9
Intron Retention
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16678188-16680631:+
Coord C1 exon
chr7:16678188-16678276
Coord A exon
chr7:16678277-16680490
Coord C2 exon
chr7:16680491-16680631
Length
2214 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTATCTTCCTTCCCACTAGATC
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACACAAGATG
Seq A exon
GTAAGATGACAGAGGGCTGGGGCAGCAAGCCCTGCCTCGAGGGCACAACTGTCCCTACCTGCCTGCAGCACATTCAGTACCTTGTAAGCGGCTTGTTACGCTTCAGTACCTTAGAAGGCTACCCTGCTGCTGCACTGCTTCTCATCAGTAAGTGCTGCTCACTCCAGCTCAGCACTTGCTGCCTTTCTCTGTCCTGATTTACTCCTGTGCATGTGCTGAAAAATACATGAACATAAAACCTAATTCTCTCTTCTGTTTTTGTTGTTGGTGTTTGTTTTTTGGTGTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACAGTCTCTCTATGTAGTTCTGACTGTCCCACTATGTAGACCACGTTGGCTTCAAACTCACAAAGATCCACCTGCCTTTGCTGGAATTAAAGGGATGTGCCACTACCACCCAACTCTTTTCTGTTTTGTTTTGTTTTTTAAGACATAAAACTACACATAATCAAGGTACTGGGACAAATATTTTACATATGTATGAATCCATAGGATTGTCACCACAGGCAAGATAGCCACGTCTCTGTGATGCCCCAGTACTTCTTCCTTCCCTGACAGCCTATCGCACATGCCACTGTGCCTAACCCTCCATGTCCCTGGTCAGCCCTGGTCTGTAAGAAAGCTGTACTTTCTGGACTTTTGTATCACTAGGGCAGCCAAACAGCATTTGTTTCACACTTTATCTAGCTGCTTATACTCAGTATACTTACTTTGAGGTTCATTTGTGTTGCATTTATTAATAGTTCACCCTTTCTGCTGCTAAATAATACTGTGCTGCATGGATGTACTACAGTTGTATTTAATCACTTGTAGTTGATGGGCATTTGAGGGGGTTCCAGGCTGGGCAATTATAAAATAAAGTGGTTATGAGCATCATGTACAGAGTCTGCTCTCAGAGCTCACTACCCTTCCCAGCACTGTTTCTTTGGTCGTTTTTGGCTAGAAGGTGAATTCGTTCCTGTTGTTCTTTCTATCTTTCTCAGAAGCAGAAACCAGCTTCCATTTCCTTTTAACTTGGTGCTGTTTCCTAAGCAGAGGATGTGCTTGTTGACTTCTAGTTTGTGACAGCACATAAGCAGTTTCAGATCCATGTGGAGAAAGTGTACTCTGGAGTGAGGTGCTCACTTGGCCAATTAATTTCCTGGGAAAGTTTCCTGGGCAGCCAAAGTTTCCTCCCATCCTACCTCCCTTCTGCTGCCTCCTCTGCTTGGTGCTGGGAATGGAACCCACGTCCTCTTTCATAGTAAGCAATCTCTCTACCACTAGGTCCCACCTCCAGCTCTCCATTTCTGTTCCCTCCACCACCATCCAGAGGCTCTTTCTTTCTTGATATAAGGCATCAGTGTGTAGCCCAGGCTGGCCTCAGGCTCTCAGTCCTCCTGCCTCAACCTCCTGAGATCTAGGATTATGGCCCCATGTCACTCACTACACTGGGATCTAGAAGTCATTGGTTTGTTGTTTATTTAATTGATTGGTGCTTTGTTTTGTTTTTCAAGACAGGGTTTCTCTGTGCAGCCTTAGCTGTCCTGGAACTTTTTTTATATACCAGACAGGCCTTGAACTCATATAGATTCACTGCCCTTTGCCTCCTAAAGTGTTGGGATTAAAGACATCCACCAAAAATCATGTTTGTTGAGAAATAGTTGCTCTATATCCCTGACTGGCCTGGAACTCACTATGTACCCAGCCTGTCCTGGAACTCTCAGAAATCATGCTGCCTTTGCCTTGCCTCCAGAGACATGCGGTATGACATTCAGCCCAGGAGTCGTATTTTTGCAAGAATAAGTGACAGGGCTTGAGTGCTGTGTACACTCATAACTGTCCTTCTCATGGGGCTACTTTCCCTAGAGGGCTTCCTCAGCTATGTTTAGTTGTGGTGGCTGGAAGCTCACCAGAGAGGAAAGGCATTCTGTGTTAATCTCACCGAGTTTGGCTGTTGCCTGCTGTAATGTCCCAGTGAGCCTCCTTACCTGTGGGTCTTTATGTGTCTTCCTACAGGGAAGAAGCATGCTGGACTTAGTGCTGATGGCTACTGTGTGGCTTCACTTTGGACCCTTCACCACCCAGAAGGACCAAGATCCCTGCCTTTGCCCAGCCATGGGCAGAGACGTTGGGGAAGGGATTTCCAGGGTGGAGTTCACATGTGAGGTACTGCCCACAACCTGCTTCTGTATCTTCCTTCCCACTAG
Seq C2 exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTCGAGTACTACTACATCTGGAAAAAGATGGTTAAGTTTGATTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAAGTAGAAAGGACTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-Zfp541:NM_001099277:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.298
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: