HsaINT0187574 @ hg38
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47521854-47529038:-
Coord C1 exon
chr19:47528950-47529038
Coord A exon
chr19:47521995-47528949
Coord C2 exon
chr19:47521854-47521994
Length
6955 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TGCTTGTTTTCTTTCACTAGATC
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTTCAGACGTCTGGACCCCTATAGAGAAGAGGCTTTTTAAGAAGGCGTTCTATGCCCACAAGAAGGACTTCTACTTGATACACAAGATG
Seq A exon
GTAAAGTGAATGTGGGCTGGTGTCCAAGGCCCTGCCTCACACAGCTGAGACAAGCTAGAGCTGCAGGGCTGGTCGGGGGTCGGAGGGCCCCACCCTCACCTGCCTGTGGCAGCACTCTTACTGTAGACAGTTTACAATGTCAAAAAGCTATCCTCATGAACAGCTCCAGATGGTACAGACCTGCATCACCTGCACAGAACAGTCTTCCATGCCCCTCCCCGCAGTCCTACTTCTGCTTGGCAACCTCTGTTACCTATTCCACCAAGCAACAGGCATTTCTGTCTGTACAAATTTTATATATATAGGTATGCATGTACTTTAAAAAAGATAAGGGCCGGCCATGGTGGCTTACGCCTGTAATCCCAACACTTTGGGAGGCCAAAGGCGGGAGGATCACTTGAGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGAGTGCCTGTAATCCCAACTAGTTAGGAGGCTGAGGCATGAGAATCGTTTGAACCCGGGAGGCAGAGTTGCAGTGAGTGGGGATTGTGCCACTGCACTCCAGGCTGGGCAACAGAGTAGGACTCTGTCTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCTCAGGGTGGAGTGCAGTGGCGCAATCTTGGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCATGCGCCACCATGCCCAGCTAATTTTGTATTTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTAGTCTCGAACCCCCGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACGGCGCCCGGCCCAGGACTCTGTCTCAAAAAAAAAAAAAAAAAAAGGGCCTGGCGTGGTGGTTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCATGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGAATCGCTTGAACCCGGGAAGCGGAGGTTGCGGTGAGCCAAGATCTCGCCACTGCACTCCAGCCTGGACAACAAGAGTGAAACTCCGTCTCAAAAAAAGAAAAAAAGGATGAGGTCAGGCGCAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGAGGATTGCTTGAGGCTAGGAGTTCAAGACCAGCCTGGGCAATATAGTGAGACCTTGTCTCTACAAAAAAGTTAAAAACTAGCCTAGCATGGTGCCGCGTGCTTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATTGCTTGAGCATAGGAGGTGAAGGCTGCAATGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAAGATGAGACTCTCACCACCCCGAAAAAAGCCAAAGGATGAGATCTCACTGCATATAATGTCCTGCTGCTTATTTTCTGTTCTAAAAAAAAAATTGGATGTATACAAAATTGCACATAATTGCAGTATAATAAGATTTGCTAAGTTTTGACATATTGATACTATACCTGGGAAACCATCACCACAGTCAAGATAATGAGCATGTCCCTCAGCCCTGAATCTCCTCCTGCCACATAGTAATCACTCCCCATTGCACCCCCTGTCCTCAGTCAGCACTGATCTGCCAGGGCACTGTAAATTCGTTTTCATTTCCTAGAGTTTGCTATAAATGGAGTAGTCACACAGTATGGACTCTACTTGGTCCAGCTTTCTCACACTCAGCATCATGATTTTGAGTTCATCCATGTTCCAGGTATTGATAGGTCTCCCCTTTTCACTGCTGAATAGTATTCCACTGGGTGGATGTACCACGGTTTAAAGAATCATTTGCCTGTTGGTGGACATTTGAGTGGTTTCCAGTTTGGGATGACTATAAATAAATTCGTTATGAACATTCAGGTACCAGTCTTGGTATGGACATGTACTTTGTTTTCTAGAGGAGTAAATACCAGGAATGGAATGACTTAGTAGGTGTATGCTTAACTTTTTAAGAAACCGCCAAACAATTTTCCAAAGTAGTTGTATCATTTCACATTCCTACCGGCAGGAAAAGAGATTTCTAGTTGCTCCACAAACTCGCTAGCCCTGGGTAGGGCCAGTCCTTTTAATTCCAGCCATTCTCATGACAGTGTGGTGGCATCGCATTGTGTTTCCTTCACAACTGACGATGCTGAGCATCTTTTCATGGGCCTGTTTGCTGTCTGTATGCCTTATTTGGTGAGGTGTCTGTTCATATCTCTTGCATATGTTTTTATTGAGATGTCTGTGTTTTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAATGCAGTGGCGCAATCCATGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATGCTCCTGCCTTAGCTTCCTGAGTAGCTGGGATTACAGGCGCCTGCTACCACGCCTGGCTAATTTTTGTATTTTTAGTAGGGACGGGGTTTTGCTATGTTGACCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCGGCTGTGTTTTTATTATTGAGTTACAGCAGTTCTTTATTGATTCAGGACACGTCATTTATCCAGATCCATGCTTTGTGAATGTTTTCTCCCAATCTGTAGCTTTTTAATCTCTTAACAATGTCTTTTAAAGAAAAATTTTGTCATTTTGATGAAGTCATTTATTAATTTTTCTTTTATGGACTGTGCTTTTGGTGTTGTATCTAAGAATTCTTTGCCTAACCCAACCACAAAGATTTTCCCCTTGTTTTCTCTAGAAGTTTTTTTTTTTTTTTTTTTTTTTTGTGAGACGGAGTCTCGCTCTGTCGCCCAGACTGGAGTGCAGTGGCGAGATCTTGGCTCACTGCAAGCTACGCCTTCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGCGACTACAGGCACATGCCACCACCATGCCCGCCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAACCAGGATGGTCTCTATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTTGCCCGGCCTTCTCTAGAAGTTTTATAGTTTTAGGTTTTACAATTAGGTTTACAATTCAGTTTGTGTTAATTTTTGTATATGGTGTAAAGTATGAGTTAAAGTTCATTTTTTGCATGTGGATATTCATTTGTACCTTTTGTTGAAAAGACAAAAAAATGTAATACCATACTGTTTTTACTACTGTAGCTTTCTAAGTCTTAAGATCATGTATTACCATATGAACTTTCTAAGTAGCTTATCCATTTTTACCAAAAAAAACAAAACAAAACAAAACAAAAAACCTGCTAGGATTTTGATTGGTACTGCATTGGCTCTATAGGCCAATTGAGGAGAGTTGACTTTTTTTTTTTTTTGGAGACAGAGTTTCACTCTCGTTGCCCAGGCTGGAGTGCAGTGGCGCGCTCTTCACTCACTGCAACGTCCACCTCCCGGGTTCAAGCGATTCTCGTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCGCACAACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAGGTGATCTACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCAAGGAGAGTTGACATTCTAACAACATTCAGTTTCTGACTCATGAACAGGGGCTGTGTCTCTATGCATCATCTTTAATTTCTCTTAGCAGTGTTTTGAAGGTTTTACTGGTTCTTATTTCTTTTAAGATCTAGGATCTCACTCTGTCGCCCAAGCTGGAGTACAGGGGTGTGATCATAGTTCACTGCACCCTTTGACCTCCTGGGCTCAAGTGATCCTCCAACTTTGAGTAGCTGGGACTACAGGTGTGTGCAATCACACCTAGCTCTGGTATAACTCTTTTTTTTTTTTTTTTTTTAGACAGAGTCTCGCTATGTCACCCAGTCTGGAGTGCAGTGGTACGATCTCAGCTCACTGTAACCTCCACCTCCTGGGTTCAAGCGATTCTGCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCGTGCCACCACACCCGGCTAAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCCCCATGTTGGCCAGGGTGGTCTCAAACTCCTGACCTCAGGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTTCAAGTGAGCCACCGCGCCTGGCCTCTGGCATAACTCTTTGAACATATATTAAACAGTTATGGTAACCTTTCATGTCCTTCCCTGCTCATTCTAACACCTGTGTCTCTGGTGGGTTGACTTTGATACATTGGGTTTTCTCCTCCTGATGTGCCGTGTTATCCTGCGTCTTTGCGTGCATGGTGATTTTCACCAGATCACGGGCATTGTGAATGTTAGCTGTTGGATGCTGGATATTTTTGCAGCCTTGTAAATATTCTTGAGTTTTGTTCTGGGACACAGTTACTTTTAGGTTCAGTTTTAGATTTTTTAGATGGGACCAGCATAGCTCTTCTCTAAGGCTGATTATTTCTCCTTACTGAGGCAAGACTGTGTCACTGCCCTACCCAGTGCCCCCTGCATCATAAAATTTCCCACTCTGGCTGTGGGAACGGGCACTCTTCCTGGCCCTGTAGGAGCAGCACACACTTTCCCCTCTCATCCTTTTGGATGGCTCTTTGCCCAGCTTTGGCTGGTCTCTTCCCATGCATGTGCTGGGCAGTCTTTGGGTGAGTTCTTGGGGGAAATTTGCTCCCCATCTCTGGAATGTTCTGTGTGTAGCTCTCTCCTCTCCCATCCTCTGTCCTGTGGGCTCTACCGCCGTGGTCTCCGGAGGCACTGTGCTCCACCTCAGCTCCCTAAGTCCTGCTGGGTTCTGCCTAAATTGCCCCTGCCTGGGTGGTGGCCTGGAAACACAAGTTGATAAGCTGGAGCGGTGGCAGCTTGCTTCCTGTCAGGGTTCACTGCCCTTTGTTGAATGACGCCTGGTGTCTTGCCAAACATTGTTTATATTTTGACTCTGTGTTTTCATTGTTTTGGACGAGAGGGTAAATCTGGTTCTGTTGCTCCATCTTGTTCAGAAGCAGAAGTCCAACTTTTTTTTAAACTTAGTGATGTCTCTTAGGCAGAGTTTGTGCTGTTTTGACTCCTCGTTTGTGAATACTCACAAAGCTGAAAAACATTTGGGTGGAGAATGTCTTTTCTGGAGTTCGCTCAATAGCCGATTTAATTTCCCAAGAAATTTTCTTCCTAGAGCAATTAAACTTTTCCTTTTTTTTTTTTTTTTTTTTTTTAAAAGAGACGCTCGCCGGGCGCGGTGGCTCACGCCTGTAATGCCAGCACTTTAGGAGGCTGAGGCAGGTAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAATAAGGTGAAACCCCGTCTCTACTAAAAACACAAAAAAATAGCTGGGCATGGTGGTGCGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGAGGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAAAAAAAAAAAAGATACTCGCTCTGGAGTACCGTGACACTATCATAGCTCACTGCTGGCCGGGTGCGGTGGTTCAGGCCTGTAATCCCAGCACTTTGGGAGGTCGGGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAGATACAAAAATTAGGTGGGCATGATGGAGGGTACCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGGACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGCGAGATTCTGTCTCAAAAAAAAAAAAAAAAAAAAGGCTCACTGCAGCCTTGAACACCTGGGCTCAAGCGATCATCTCGCCTCAGCATCTTAAGTAGCTGGGACCACAGGCATGCACCACCATGACTGGCTAATTTTTTAAAAATTCTGTAGAGATGGGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGACCTCAAGTCGTCCTCCTGCCTCAGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCAAGCCCAGCTTCCCTTTTGTTTTTAACAGAAGTTATTTTTAGTGGGATCCTTTCTTAGTGGAGGAACGGGAAAATAATCCCCTAGGTTCACACTGTGCACTCAAAACCTCCCCTTCTTCTAGAGTGGGTCACTTCCTGCCAAGACTTTAGAGGCTCTGCCTAGCTGTTGTAATGTCTGTGTGGTATTCTGCCTGCAGAGAGCATTCCGATTTATTAGCATGATGTCACAGTTGGCATCCCTGGTGCAACCTTTGTGCCCATCTTCCTTAGGAAAGAATTCCTGAGCTGGAATGGCTGCTCAGAGTGTGCAGGCTTAGGTACTGGTGGCTACTATGTGGCTCCAGTTTGAACGCCCTCGTCCCCAGGAAGGATTTTGTGGTCCTGTGCCTTTGTGGTGAGTGGTAACGCCAAGCCAAAGGAAGAGGTGCTTCCGGAGGGCTTTCCAAAGGAGGCGGCCGGCCCAATGGCAAGGTCACACTCCCAGGGCCCGCGTGGCACAGCCACAGCCTGCTTGTTTTCTTTCACTAG
Seq C2 exon
ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCGGAGGAAGTGGAAAGGACAGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156:ENST00000391901:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.365
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains