MmuINT0179525 @ mm9
Intron Retention
Gene
ENSMUSG00000062794 | Zfp599
Description
zinc finger protein 599 [Source:MGI Symbol;Acc:MGI:2679006]
Coordinates
chr9:22051874-22056075:-
Coord C1 exon
chr9:22055972-22056075
Coord A exon
chr9:22054985-22055971
Coord C2 exon
chr9:22051874-22054984
Length
987 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ACAAATTCTTTTATTTCAAGGCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATTTTCACATATTGACTGCACCAATTGTGACCAGCCAGAAAAATCACAAGGCATATATGTGGCAAGCTAGAACCACCGAAAATAAGGCATCAAATGAAAAGATT
Seq A exon
GTAAGTAAAACATTAAATTTGGGCACTTGACTTAATTCAAACCTGACCATAAAGAGGGGACCCTGTCATCTGCAAGAATGGTATGGGTGTCTGGCAAGAGGCTCAGTGGGAAGAGTGCTCCTTGTAAGCACAACGACCTAAGCGGGATCTCAAGGACCCATGCAGAAAGCTGAGTGTGGCCACAGGCAGCCGATAGCCCAGTGCTCAGAAGAATGGGGAGGAAGGATGTCTGGGACTTCAGGACATCTAAACTATCCAAGTGAGGGACCCTTTCTTAAAACTTATGGTGGAGAGTGATTGAGAAAGGCACGTGATATCAGCCAATGGTTTCCACATGCAAACACACACACATGCGCATGCAAACTTGCACACCACCAGACACACATGCACAAGCATGGATATGCTCATATGCCCCCCTCACTTACACTCAACCCAGGCAACAGTGTGCTGTTTCTTGATATTTAGTCTCATAAATTGCAGAGTAGAGAATAACTCAAAAAAATATTAATTTATTTATTCACTTCACATCCTGATGGCAGCCCCCTCCCTCCTCTCCTCTCAGTCCCTCCCATACCCTTTCCCTACTCCTCTCCCCTTTTCAGAGCAATTGGCAAATCTCTCTTGCATCCTGCATATCTTCTTTTCCATAACAACAAAGCTTCAGTATATTTGACCAGGGCTATCATTCTTCACTGACTCAATATGTCTGACACATAGTAAAGTCTCCTTTTAAAGATGTTATAGTAAATTCAATAATAAGGTGATGCTTACATATGTAGCCCAAGACTGGGATCATGGGACGTTATCTAACCACTATTAATCTATTCAGGATTCTTTTTTATAAAAGTTGATTCAGTAGACAAAAGTGTGTATGTATGAGAAATGTGTGACTGTGGAAAATCATAGCTCACAGAACCTCAAGAACATATTCTAGGAAAAAGGCCTCTCCTCACATATAAGAAATATAACAAATTCTTTTATTTCAAG
Seq C2 exon
GCAGAGCTAAAGGAGCAACAGAAGATCCATCAAGGGTCAAAATCCTGCGAAAGAGAAGCACATGGGAAGACATTTTTTCAGAAAGCCCAGAGCACTGTGATTCAAATGTCTCCTACACGTCAGACAGCTCTCCATTACACGGCAACTCTCACTAAAGGTCAGAGACCTCACAGAGGGAAGATGAGCCGTGAGTATGAAGAATGCAGGAAAACCATCTTCCATAACTCACACGTTCCAGGATGTCAGAAAACTCTTATAGATACAAAGCTTTGTGGATGTACAGAGTGCAGAAAAGATTTCTCTTGCAACTCAAAACTCACAAGTCATCCAAGAACTCGCATACGTAAGAGGCCCTATAAATGTAAGGAATGTGGGAAAGCCTTCTGCTCTCAGGGAAAACTTACTCTACATCAAATAGTTCACACAGGTGAGAAGCCCTATGAATGTACAGAATGTGGGAAAGCCTTTTCCCACAAGGCATACCTCACTCAGCATCAGAAAATTCACATGAGCAAGAAGCCTTATGCATGTACTGAATGTGGGAAAGCTTTCTACCGATTATCACACCTTACTCTGCACCAGAGAACTCACACAAATGAGAAACCTTATGACTGTACAGAATGCCAAAAATCTTTCTCCTGCCGGTCACAGCTTACTCTACATCAGCGAACTCACACAGGTGAGAGACCTTTTGAGTGCATGGAATGTGGAAAATCTTTCTACTACAAGGCACACCTAATTAGACATCAGAGAATTCACACCAACGAGAAGCCCTTTGAATGTATAGAGTGTGAGAAATCCTTTTACTGCCAGTCGGACCTCACTGTGCATCAACGATCCCACACAGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAATCATTCTACCAGAAATCAAAACTCACTCTACATCAAAGAAATCATGTAGGTGAGAAGTCTTATGCATGCACAGACTGTGGGGAAGTTTTCTATTGCAAATCACATCTCACTCTACATCAGACTGTCCATACAGATGAACACCCATATATATGTACAGAGTGTGGGAAATGTTTCTACTATAAGTCACAACTCATTGTCCATGGAAGAACTCACACAGGTGATAGACCCTACAAATGCGGAGACTGTGGGAAAGCTTTCTCCCGAAAGTCACACCTCATTCGACATCAAAGTATTACTCACATAGATAAGAACAATTTGAATGTAGCAAATGTGGGAAAGGTTTCCACTGTAAGACCAGACTCACTTCACACTCACTCACTTTACCTCAGTGAACACAAGCATGCGCCAAGCATTTTGAAGGAAAAGAATGCAGGATAGCTTTGTACTTCAAGCCACAAATAACAGCAGAGGACAACTCAGAGGAAGAGCCCTGTGAATGGGAAGAAAGAGAAAACTTTATATTGTAAGGCTGTGAGAAAGAACTCTGAAAATATGAGTTCAAGATACATAGTTTCCCAACTATGCAAAATACAAAGATGCAAAATGAATTATATGAGAGGCTTCACAAACCTAAAAGAACAGCAGCTGCGCTATGACCCAGGTTGAAAAAGATACAAAGGCAGGAAGACTCCTGAGTTCAAGGTCAGCCTGGAACAGAGCAAGGATAGGCCCAGGTGTGGTGGGAATTGTAATCTCAGGACTGGATCCCACCCAACTAAAGTTATTGTCTGTGTTTAACAAAGACAGATCTCTGAATTCATTTGCAATGAAGAAAGAAAGGAAAGAAACAAAGAAAGAAAGAAGATAAAGGTGTTTGCTGTCTCTTTCTAAGAATCAAGGGGCTGGAGTCAGGGGATGCTGATTCATGGGATAATCAAAAGTGAACCTGGGGTAAATGATTGAACTGATATGTAAATAAAAGATAGGTCGAAGAGATGAGTTATCCAGCATTTTCAAAATTGTATTCAAGCAAGAGAGAGAGCTGTCTTGAGCAGAACACAGGTTGGCTGTCGGCTTGTACCCATGATTGACTTTGAGTTTTTTTTACCGCTCTCAAACACCCCTTCTCTCAGGAACCCCTCTCCAAGCTGAGGCTGGTCCTTGGCACAGAAAACCTGAATTGAATTCCCAGGTCTTCTGCTACCAGGAACTCTAGCTCCAGGTAATTCAACATCCTTGAATCTCCCTCTGCAGCTGAAGAAGGTTGCTGAGGCTAGGCATGTCCCTGTCCCTGCATGGAAGTCCAGAGAGGCTATTGTATGAAATTGTGAAGGGGAGGCCTAGAGACTCCAAGAGGTTAGATATGCCAGACCTGTGGGATACCTGCCCAGGAAAGCTGCTACCAGGGAGTGCAACCAGCCCAAGAGAAAGAAGTTTGTTGCAGTCAACAAAGCTGAAAGGAGCTGGAGAGCTGAAGAACACTTTGATATCAAACATGGAGATGCAGAGTTGGGAGTTTGCCAGCTGGTTTTCAGTCCTGCTTTGGTCCAGTCTTTTCTCACTAGGCTCTCTTCCCTATGTTTTAGAATGGTGATGTGTATCCTGTGCCGTGATACATTGAAAGTATGTGCTCTGCTTTTTATTTATTTATTTAATTTGAATTTTATTTTATTTTATAGGGGATTACAATTAAGAGGTTGTACAAACCTCAGAAGAGACTTTGAACTTTGGACTTTAAAACATTGTTGAGACTGATAGACTGTGGGGATTTTTTGAAGTTGGACTAAATGCATTTTGCATTATATTATGGTTACAAGCCTATGGGGGAAGGAAGTAGAATGTGGCAGTTTGAATAGCTATGGCCCCATTGTCAATGGCCTGAAAACCTTTTGATAATCATGATCTCTATTGGGAAGTTAAGGCAGGAGAATGAATTCAAAGCCATCCTCAGCCACATGGCATGTTCCAGGTTACATAAGACCCTGTTTCAGAAAGCAAAAATAGAGCTGGCTCAATGGTTAAAAAAAACAGATGTCCTTCCAGAGGATCTGAGTTCTATTTCCAGCACCCACATGACAGCTAACAACTGTCTATAACTCCAATTCTAAATCCAACACCTTTTGCTGGTCTCTGACAGCAATGTACACGTGTGGTCCACAGATATCCATGCTGGTAAAATACTCATAACACATGAAATAAAAATAAATAAATAAACAAATAATTAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062794-Zfp599:NM_181419:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079757=C1_4=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0009621=zf-C2H2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGCATATATGTGGCAAGCT
R:
GCACTCTGTACATCCACAAAGCT
Band lengths:
347-1334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: