MmuINT0179525 @ mm10
Intron Retention
Gene
ENSMUSG00000062794 | Zfp599
Description
zinc finger protein 599 [Source:MGI Symbol;Acc:MGI:2679006]
Coordinates
chr9:22247430-22251631:-
Coord C1 exon
chr9:22251528-22251631
Coord A exon
chr9:22250541-22251527
Coord C2 exon
chr9:22247430-22250540
Length
987 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ACAAATTCTTTTATTTCAAGGCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATTTTCACATATTGACTGCACCAATTGTGACCAGCCAGAAAAATCACAAGGCATATATGTGGCAAGCTAGAACCACCGAAAATAAGGCATCAAATGAAAAGATT
Seq A exon
GTAAGTAAAACATTAAATTTGGGCACTTGACTTAATTCAAACCTGACCATAAAGAGGGGACCCTGTCATCTGCAAGAATGGTATGGGTGTCTGGCAAGAGGCTCAGTGGGAAGAGTGCTCCTTGTAAGCACAACGACCTAAGCGGGATCTCAAGGACCCATGCAGAAAGCTGAGTGTGGCCACAGGCAGCCGATAGCCCAGTGCTCAGAAGAATGGGGAGGAAGGATGTCTGGGACTTCAGGACATCTAAACTATCCAAGTGAGGGACCCTTTCTTAAAACTTATGGTGGAGAGTGATTGAGAAAGGCACGTGATATCAGCCAATGGTTTCCACATGCAAACACACACACATGCGCATGCAAACTTGCACACCACCAGACACACATGCACAAGCATGGATATGCTCATATGCCCCCCTCACTTACACTCAACCCAGGCAACAGTGTGCTGTTTCTTGATATTTAGTCTCATAAATTGCAGAGTAGAGAATAACTCAAAAAAATATTAATTTATTTATTCACTTCACATCCTGATGGCAGCCCCCTCCCTCCTCTCCTCTCAGTCCCTCCCATACCCTTTCCCTACTCCTCTCCCCTTTTCAGAGCAATTGGCAAATCTCTCTTGCATCCTGCATATCTTCTTTTCCATAACAACAAAGCTTCAGTATATTTGACCAGGGCTATCATTCTTCACTGACTCAATATGTCTGACACATAGTAAAGTCTCCTTTTAAAGATGTTATAGTAAATTCAATAATAAGGTGATGCTTACATATGTAGCCCAAGACTGGGATCATGGGACGTTATCTAACCACTATTAATCTATTCAGGATTCTTTTTTATAAAAGTTGATTCAGTAGACAAAAGTGTGTATGTATGAGAAATGTGTGACTGTGGAAAATCATAGCTCACAGAACCTCAAGAACATATTCTAGGAAAAAGGCCTCTCCTCACATATAAGAAATATAACAAATTCTTTTATTTCAAG
Seq C2 exon
GCAGAGCTAAAGGAGCAACAGAAGATCCATCAAGGGTCAAAATCCTGCGAAAGAGAAGCACATGGGAAGACATTTTTTCAGAAAGCCCAGAGCACTGTGATTCAAATGTCTCCTACACGTCAGACAGCTCTCCATTACACGGCAACTCTCACTAAAGGTCAGAGACCTCACAGAGGGAAGATGAGCCGTGAGTATGAAGAATGCAGGAAAACCATCTTCCATAACTCACACGTTCCAGGATGTCAGAAAACTCTTATAGATACAAAGCTTTGTGGATGTACAGAGTGCAGAAAAGATTTCTCTTGCAACTCAAAACTCACAAGTCATCCAAGAACTCGCATACGTAAGAGGCCCTATAAATGTAAGGAATGTGGGAAAGCCTTCTGCTCTCAGGGAAAACTTACTCTACATCAAATAGTTCACACAGGTGAGAAGCCCTATGAATGTACAGAATGTGGGAAAGCCTTTTCCCACAAGGCATACCTCACTCAGCATCAGAAAATTCACATGAGCAAGAAGCCTTATGCATGTACTGAATGTGGGAAAGCTTTCTACCGATTATCACACCTTACTCTGCACCAGAGAACTCACACAAATGAGAAACCTTATGACTGTACAGAATGCCAAAAATCTTTCTCCTGCCGGTCACAGCTTACTCTACATCAGCGAACTCACACAGGTGAGAGACCTTTTGAGTGCATGGAATGTGGAAAATCTTTCTACTACAAGGCACACCTAATTAGACATCAGAGAATTCACACCAACGAGAAGCCCTTTGAATGTATAGAGTGTGAGAAATCCTTTTACTGCCAGTCGGACCTCACTGTGCATCAACGATCCCACACAGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAATCATTCTACCAGAAATCAAAACTCACTCTACATCAAAGAAATCATGTAGGTGAGAAGTCTTATGCATGCACAGACTGTGGGGAAGTTTTCTATTGCAAATCACATCTCACTCTACATCAGACTGTCCATACAGATGAACACCCATATATATGTACAGAGTGTGGGAAATGTTTCTACTATAAGTCACAACTCATTGTCCATGGAAGAACTCACACAGGTGATAGACCCTACAAATGCGGAGACTGTGGGAAAGCTTTCTCCCGAAAGTCACACCTCATTCGACATCAAAGTATTACTCACATAGATAAGAACAATTTGAATGTAGCAAATGTGGGAAAGGTTTCCACTGTAAGACCAGACTCACTTCACACTCACTCACTTTACCTCAGTGAACACAAGCATGCGCCAAGCATTTTGAAGGAAAAGAATGCAGGATAGCTTTGTACTTCAAGCCACAAATAACAGCAGAGGACAACTCAGAGGAAGAGCCCTGTGAATGGGAAGAAAGAGAAAACTTTATATTGTAAGGCTGTGAGAAAGAACTCTGAAAATATGAGTTCAAGATACATAGTTTCCCAACTATGCAAAATACAAAGATGCAAAATGAATTATATGAGAGGCTTCACAAACCTAAAAGAACAGCAGCTGCGCTATGACCCAGGTTGAAAAAGATACAAAGGCAGGAAGACTCCTGAGTTCAAGGTCAGCCTGGAACAGAGCAAGGATAGGCCCAGGTGTGGTGGGAATTGTAATCTCAGGACTGGATCCCACCCAACTAAAGTTATTGTCTGTGTTTAACAAAGACAGATCTCTGAATTCATTTGCAATGAAGAAAGAAAGGAAAGAAACAAAGAAAGAAAGAAGATAAAGGTGTTTGCTGTCTCTTTCTAAGAATCAAGGGGCTGGAGTCAGGGGATGCTGATTCATGGGATAATCAAAAGTGAACCTGGGGTAAATGATTGAACTGATATGTAAATAAAAGATAGGTCGAAGAGATGAGTTATCCAGCATTTTCAAAATTGTATTCAAGCAAGAGAGAGAGCTGTCTTGAGCAGAACACAGGTTGGCTGTCGGCTTGTACCCATGATTGACTTTGAGTTTTTTTTACCGCTCTCAAACACCCCTTCTCTCAGGAACCCCTCTCCAAGCTGAGGCTGGTCCTTGGCACAGAAAACCTGAATTGAATTCCCAGGTCTTCTGCTACCAGGAACTCTAGCTCCAGGTAATTCAACATCCTTGAATCTCCCTCTGCAGCTGAAGAAGGTTGCTGAGGCTAGGCATGTCCCTGTCCCTGCATGGAAGTCCAGAGAGGCTATTGTATGAAATTGTGAAGGGGAGGCCTAGAGACTCCAAGAGGTTAGATATGCCAGACCTGTGGGATACCTGCCCAGGAAAGCTGCTACCAGGGAGTGCAACCAGCCCAAGAGAAAGAAGTTTGTTGCAGTCAACAAAGCTGAAAGGAGCTGGAGAGCTGAAGAACACTTTGATATCAAACATGGAGATGCAGAGTTGGGAGTTTGCCAGCTGGTTTTCAGTCCTGCTTTGGTCCAGTCTTTTCTCACTAGGCTCTCTTCCCTATGTTTTAGAATGGTGATGTGTATCCTGTGCCGTGATACATTGAAAGTATGTGCTCTGCTTTTTATTTATTTATTTAATTTGAATTTTATTTTATTTTATAGGGGATTACAATTAAGAGGTTGTACAAACCTCAGAAGAGACTTTGAACTTTGGACTTTAAAACATTGTTGAGACTGATAGACTGTGGGGATTTTTTGAAGTTGGACTAAATGCATTTTGCATTATATTATGGTTACAAGCCTATGGGGGAAGGAAGTAGAATGTGGCAGTTTGAATAGCTATGGCCCCATTGTCAATGGCCTGAAAACCTTTTGATAATCATGATCTCTATTGGGAAGTTAAGGCAGGAGAATGAATTCAAAGCCATCCTCAGCCACATGGCATGTTCCAGGTTACATAAGACCCTGTTTCAGAAAGCAAAAATAGAGCTGGCTCAATGGTTAAAAAAAACAGATGTCCTTCCAGAGGATCTGAGTTCTATTTCCAGCACCCACATGACAGCTAACAACTGTCTATAACTCCAATTCTAAATCCAACACCTTTTGCTGGTCTCTGACAGCAATGTACACGTGTGGTCCACAGATATCCATGCTGGTAAAATACTCATAACACATGAAATAAAAATAAATAAATAAACAAATAATTAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062794:ENSMUST00000086281:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079757=C1_4=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0009621=zf-C2H2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGCATATATGTGGCAAGCT
R:
GCACTCTGTACATCCACAAAGCT
Band lengths:
347-1334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types