RnoINT0082236 @ rn6
Intron Retention
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23235594-23238730:-
Coord C1 exon
chr8:23238627-23238730
Coord A exon
chr8:23237527-23238626
Coord C2 exon
chr8:23235594-23237526
Length
1100 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ACAAATTCTTTTATTTCAAGGCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATGTTCATGTATTGACTGAACCAATTGGGACCAGCCAGAAAAGTCACAAAGTGTGTGTGTGGCAAGGTAGAACCACCCAACACAAGGCATCGAGTGAAAAGATT
Seq A exon
GTAAGTAAAACATTAAATTTGGGCACTTGACTTAATCCAAACCTGGCCATAAATAGGGGAACTTCTCTCCCATAAGAATGTTATGGGTGTCTGGCAAGAAGCCTCAGTGGGCAGAGCACCTTGTATCTATCGTTAATATTGTAGAGAAATGGAGAAACCAGGAAACAGCAGGTGAAATTCACTTAAAACCTACAGACAAATGTGAACAGCTCCTTGGGTAGACTCCTTGCAAACACAAGGACCTAAGCTTGATCCTCAGAACCCATGAAAAAGCTGCATGTGGCCACAGGCAGCTGATGTCCCAGTGCTCAGAAGAATGGGGAAGAAGGATGTCTAGGACTTCAGGACATCAAAACTATCCAAGTCAACAATCTTCTCCTTTAGTGAGAGACCCTTTCTCAAAAGATATGGTGGAGAGTGATTGAGAAAGGCACCTGATCTCAGCCTCTAGTCTCTTCTTGCAGACACACACTCATGTGCATGCACACTTGTGCACCAACAGACACACATGTGCAAACATGGATGTACTCTCCCCCACACTTACAAATACTCAACCCAGGCAACAATGTGCTGTTCCTCAATATTTAGTCTCATAAATTACAGAGGAGAGAATAACCCAAAGTTTTTTATTTATTTATTCATTTCACATCCTGATGGCAGCCCCCCCTCTCCCCTCAGTCTCTCCCACCCCCTTTCCCCACTCCCCCCTTCTCTTTTCAGAGCAATTGGCAAACCTCTCTTGCATCAAAAGAAAGATGTCTTCTTTTCCATCACAGCAAAGCTTCAGTGTATTTGACCAGGGGTATCATTCTACACTAACTCGATGTTAGTTACATCAAGTAACACAGAGTGAAGTGTCATTTTAAAGATGTTATAGTAAATTCAGTAATAAGTGACACTTATATACATAGCCCAAGACACAGAACATGTGACGTTATCTAACCGCTATTAATCTATTTAGGATTCTGTCCTATCCTACTGAGTTGACTCAGTAGACAAAGTGTGTACATGTGAGAAATGCAAGAGTGACTGGGGGAACAAAAGCTAGGAAAAGTCCTGTCTGCAGATATGAGAAATATAACAAATTCTTTTATTTCAAG
Seq C2 exon
GCAGAGCTAAAGGAGCAACAGAAGAAGGTCCATCGAGGGTCAAAAACCTGTGTAAGGGAAGCCCATGGGAAGACGTTCTGTCAGAAGTCCCAGTGCACGGGGATTCAGTTGTTTCCTATGGGTCAGACAGCTCTCCGTTACAAGACTAAAGGTCAGAGACCTCACGAAGAGATGAGCCATGAGTATGAGGAATGCAGGACAAGCATCTTCCAGAACTCACAAGATACAGTATGTCAGAAAACTCTTAAAGACATAAGGCTCTGTGGATGTACAGAGTGTGAGAAAGCTTTCTCTCCCAACACACAGCACACAAGTCACCCAAGAACTCATGTACGTAAGAGGCCCTATACATGTAAGGAATGTGAGAAAGCCTTCTGCTCTCAGAGAAAACTTAATTTACATCAAATAGTTCATACAGGTGAGAAGCCCTATGAGTGTCCAGAATGCGCGAAAGCCTTCTCTCACAAGGCATACCTCACTCAGCATCAGAAAATTCACATGAGCAAGAAGCCTTACACATGCGCTGAATGTGGGAAAGCCTTCTACCGCTTAGCGCACCTTACACTGCATCAGAGAACTCACACGAACGAGAGGCCTTACGATTGTACGGAATGCCAAAAATCTTTCCACTGCCGGTCACACCTTACTCTACATCAGCGAACTCACACGGGCGAGAGGGCTTTTGAGTGCATGGAATGTGGGAAATCTTTCTACTACAAGGCACACCTAACTCGACATCAGAGGATTCATACCAACGAGAAGCCCTTTGAATGTGTAGAGTGTGAGAAATTCTTCTACTGCCAGTCAGACCTCACTGTGCATCAACGATCTCACACAGGTGAGAAGCCCTATGAATGTACGGAGTGTGGGAAAGCCTTCTACAAGAAGTCAAAACTCACTCTACATCAGAGGAATCATATAGGCGAGAAGCCTTACGCATGCACAGACTGTGAGAAGGTTTTCTATTGCAAATCACACCTCACTCTACATCAGATAATACATACAGATGATCACCCATATATATGTACAGAATGTGGAAAATGTTTCTACTATAAGTCACAACTCGTTGTCCATGGAAGAACTCACACAGGTGACAGGCCCTACAAATGCGGAGAATGTGGGAAAGGTTTCTCCCGCAAGCCACACCTCATTCGACATCAAAGCATAGCTCACTCAGATAAGAATAATCAAAGCATAACTCACACAGATAAGAACAGTTTGAATGTAGCAAATGTGAGAAAGGCTTTTGCTGCAAGCCACGGCTCACTTTACATCAGTGAACGGGAGCATGTGGCAAGCATTTTGAAAGAGAAGAATGCAGGATAGCTTTATACTTCAAGGCACAAGTAGCAGCAGTGGACAACTCGGATGAAGAGCCCTGTGAATGGGAAGAATGAGAAAACTTCATACTCCAAGGCTGTGAAAAACAACTCTGAAAACATGAGTTCAAAATACATAGTTTCTGAAAATATAAAGATGTAATATGAATTATAGGAGGGGCTTCACAAACCTGAATGAACACAGGCAGCTGCACTATGACCCAGCTTGTCAGAAAGATACAAAGGCAGGCAGATTCCTGAGTTCAAGGTCAGCCAGGGACAGCAAGGATAGGTTCCGGTGAGGTAGGAATGGTATTCTCAGGACCAGATCCCACCCAGCTAAAGTTACTGTCTGTGCTTAACAAAGACAGGCAGATCTCTGAATTCATTTGCAATGTTTAAAGGAAAGAAAAAGAAATGTACTTTAAGAATCAAGGGTCTGGAGTCTGTCAGGGGATGCTGATTCATGAGATAATCAAAAGGGAACTTGGAGTAATGACTGAACTGATATGTAAATAAAATATTGGTCTACAAGAGTTATCCAGAGTTTTTAGTATTGGTTTCAAGCAAGAGAGAGCTGCCTTGAGCAAAGGGCTGTCTGTCACCTTGTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496:ENSRNOT00000082252:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079757=C1_4=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0009621=zf-C2H2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACAAGGCATCGAGTGA
R:
CTTGGGTGACTTGTGTGCTGT
Band lengths:
351-1451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]