MmuINT0179612 @ mm9
Intron Retention
Gene
ENSMUSG00000045639 | Zfp629
Description
zinc finger protein 629 [Source:MGI Symbol;Acc:MGI:2444524]
Coordinates
chr7:134756181-134757947:-
Coord C1 exon
chr7:134757467-134757947
Coord A exon
chr7:134756288-134757466
Coord C2 exon
chr7:134756181-134756287
Length
1179 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
TACCCATCTCTCCCCACCAGAGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
CGGTCAGCTCAGCAGGGTAACCTTCTCCTCTCCGGGGGGCCCCCATCTCTCCCTAAAAACACTTAGAGATAGGGGATGGCTAACTCACTTCTCGGCTGCATTAGCAGTTGGTCAGCTGTCCATTGCTTCACCTGCTTCACACCCCAGCTACCTCTTGGTGAGCTTTGTCCTCTTTGTCCCTGTGCACAAAGTACCTATGCACACTGTCACCCCGAGGGTAGATTATTCCAGGGATTCCGTTAGATGTCAGCGCCCTCCTGCAGCCCTGTTCTCTCTCCTGGGGATCACCCCCGGGATTTTGAGTGACAGATATGACTCCTTCCCCTGGGGGCTCACTCTGACGAACTTATGTCACTTTTCTGACATCGATCTGCAAACTGATCTTAAAAGACACTGAACAAGATAGGCTGGCTTTCTGGGAGCATGAGGTGTCCAGCTCACTCAGTCCTCCAGCAGAGTTTTTACTGGGTACTTGTCCTAG
Seq A exon
GTGTGTGATGAAGCATCAACAAAAAGAATAAGGCAGAAGGATGGGTCCCCAGGTGTGTGTCTGGGTGGCTTTGGGGACATCCGTACCTAGAGCTCAGAGACGCAGCCTCTCAGACCTCCTCACTGGGTCTGACTTTTGCAGCCGAGGGAACTGGGCTTCCCTGCACTTTTCTGGCTCATTCTCGGGCTTCCGAGCTCTCCTCCTCTCCTGCCAGGAGACCACAAGTAGGAGTCTCATGTGACTGTCAAGGTCAACCCATGCCACAGGGCAAGCCAAACACAGAACGCGGAATTTGTGGTCTTAGCCCTGTTACTTCCCGCCTTGGGGCCTTGGAGACATTTCCCCCAGTGTCTACTTACTAATCTGTAAAATGGACAAATGACTCTTAAGTCTCTCAAGGCAGTGAAAGGAAGAAGACACCTGGTAGTCACCTATGCTCTCTACACACTTGCTTCCCTCCCCTCCTTGCTTGTCCTTTCTCCTTCATTTTGTTTGAGACAAGGTCTCGGGTAGCTGGGACTGACCTTGACCTTGACCTTCTGATCCTCTGGTTTCCATCTCCCAAGTATGCCACCGAGTCAGGCTCCCCTTTTCCTTGCCTTCGTCTCCTGTAGGAGCCCCTGACTTCAGACTCCCCTTCCCACCCATAGGCTATCCTCTGTGCTTGGAGAATGGCAAACTGCCCCCACTCTTTGTGAGTAGTTGTCCCTTCAGGGAAACTTTTTTTTTTAACCCCTTAAAAAGAGTCAGTCTCAGTTCTCTCTGGGGCTCATAAGGGAAAAGTTTATTGCTCTCAATTAGCAGTCCCATAAAGGAAGAAAATTGGAGTCTTAATGAGCTTCCTCTGATTTGCAAAATAACACGTTTCCAGGCCTCTGGGCATCAGATGTGTGGGGTGAAAGCCTGCCTCCCATCTGAATGTTGGATAGCGCTCCAGCCTTCAGTGCAGGTACAGAGGGTTATGACGATGGGGTTTCCATTGCCTCTCCATTCACCGACTTGCTTCATTGCAATCTGGAAGATTTGCAGTATTTGGAACCAGGCCTTTGAGACTAAGGGGCTCAGTGAGAAATGGTGTCGGAGAAGTGAGTGGCGGCAGGTCCCCGAGAGTCACACAAGTGGGAGCACAAAGAAAAGCACTAAACCTGGTCCCATTGTGTACCCATCTCTCCCCACCAG
Seq C2 exon
AGACCCTGGAACCTTCACAGTCTGCAGCCGTGGGATGGAGCCTGAGACGGTGCTGTGGGGCCCGGATCTGCAGGGTCCTGAAGAGAGCCAGAATGAGGCTCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045639-Zfp629:NM_177226:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCTTTGTCCCTGTGCAC
R:
GCTGCAGACTGTGAAGGTTCC
Band lengths:
343-1522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: