HsaINT0187932 @ hg19
Intron Retention
Gene
ENSG00000102870 | ZNF629
Description
zinc finger protein 629 [Source:HGNC Symbol;Acc:29008]
Coordinates
chr16:30795731-30798523:-
Coord C1 exon
chr16:30798349-30798523
Coord A exon
chr16:30795837-30798348
Coord C2 exon
chr16:30795731-30795836
Length
2512 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ATCGCTGTCTTCCCCCGCAGGGT
3' ss Score
12.6
Exon sequences
Seq C1 exon
TCCTGCTCCGTCCCAGTCACCCTGAACTGGTCCCCGGGTCCTCAGCCTGGAATCACCCCTTGAGAAGGACCCCAGAGTCCTCGGCGCCCAGTCCGTCCCCCGAGGCAGGGCACTGAAGGGGTTAAGTCCCCTGGGGCTGGATTCCGCCTTCCGGCTTTTCCCAGACCCCAGAGCC
Seq A exon
GTGAGTTGGGGACGCCTGGGTTCCCGGGGGGTGGCCTGGAGTGCCCGGGACGGCCGCCGGGGAACAATGGGGCCCGGGAGGCGGGGGCCGGGAGCCCGGGCCTGAGCCCCCCACCCGCGCCCGGGGCTGTGGCCGGGGTGGGGGCGGGCGGGGGGCGCGGAGGGCCGAGGATTCTGGGAAGCGCGGGGGTCGGTGGCGGGGGAGGGGAGCCTGGGGATTCTGGGAAGAGGGATCGGCCGGGGCCGGGGACCAGCGCTGCCAGCGCAGCCCTGGAGGAGCCTGGCAGTGCTGGAAGGAGCCGGGACCCCGGGGGCCGGGGCAGGGGCGGATGCCCAGGCTCTGTATCAGCAGCGGGACGGGGGTCGCGGCTCCGGGGGAGCAGAAGTCCGGAGCCAAGCGGTGGGGGGGCCGGGCCGGGCGGCCGCATTCCCGCCGCCTCCATGTCAGGGTCACCCTGGGCCGTTCCCCACATCTCTCGGGAGGCGGCTCCTCATTCCCTCCCTCTGCAGTGGGGCCATCGCGAGGTCTCAGGCTGGCGTGCCTGGCGCCTGGGCTCCCAGCGCCTCGGCCTCCCTCGGTCTTCCCACGTCCATGCTCTGTGTCGGCCCTGTCATTAACCCTTTCCCTCCTACTCTGGACCACTAGGGGAGAATTTTTTGGAGACCATCGAGGTCCACAAACTCTTACCTGTCCCGAGCAAACACAGCAGGGCATCCTTCCCGGACCGGACATCAGGCAGCCCCCAGTGTGGCAGAGGTCTCCGCTTCCACCACCCCAAAGACACTTACAGGCGGGGAGGGGGGATTCTCGGAGCTTAAGTAGCTGCAGAGATGAAGAAATTAATTTACTTCCTAAACGCTAACTTCTGTCTCTCCTACCGCTCTTTGGCAGGGTGCAGCCAGTCTTGCTTCACCTTGGTCACCTCTCAGCGCCTCCTGCCATGTCTCCCTTGCCCCACTGCCCCTGTGCACACAGCGCCCACCTCACACAGCCATCCAAAGTTTCCAGGCCCCACCCAGGGATTCTCTGCAGGGTGTAAATGGTGTGGGACCTCCTTCAAGCGCTTTGTTCCTGTGGCCCCATTCCCTCATCCTGAACTCATCTCACCATTTTTGGAGTGACAGCTGGCTGTTTTTATTTATTTATTTATTTATTTATTTATTTATTTTACCAGGGGGCCACTTGGAACTCCTGCTCCTTTGCTGCCATCCCCTTGCAAACTGATCTTTAAAGGCATTAGACCAAACAGGTGTTCCAGGGGCTAGGGACATCTCACTCATTCATTCATTCAACAAAGTTTCTGGAGCACCTATTCAGTGCCAGGCTAGGCTTGGGAAACAGCCTCAAGAAAGCAGGACAAAAGGAGTAGAAGGAGGGTCCGGGCAGGAGTGGGGATAGGAGGGCTTTGGTGGGGAGTATGGTTCCAGCTCATGGGTGCAGACCAGCAGGCCTAGTCCCTGGGTCCAACTCCTCCTTTTCTAGCCTGGGAAACCTCTGGGTCCCAGGAATTTCTCCAGCCTATTCTCACTGCCAGCAGGCTCCCCATGAGCTGTCCTCATCACCTGTCTCCTGCCAGCCTCCCATGAGCATGAGTCTCACATGACTCCCAAGGTCACCTCGTGCTCTCAGAGACAGGGGTGAGCCAGATATGGAGCCCTGCTTTTATCATCTTAGCTCTGCCACTTCCCAGCCTTGACCTTGGAGAGGTTTCCCCAGGCATTGATGTACTAATCTGTAAAATGGACAGCCTGATTCCTGGGTCTCCTCACCAGGCTGTGGGAGGACTGGGTGAGAGAAATGACACCATGGCAGGCACTGGGTCTGCCGCAGGTGTTCACACAAGCATCCATCCTCCCCTTCTCCTTACTTTTTCTCTTCCTCTGGGCGGTTCCTGCAGATGCAGCTTTAAACTGCCCCTCTCCCCACCTCCAGCCTGACCCTCTTTCTGTGCTTGGATAACAGGGAAGTGCCCCAGTCCTTTTAGAGGGCCTCTGTCTCCTCTGGGAAACTGGGGTGTTTTTTTTTCTTAACCCTTTAAGTGTCTCAGGCAGCCTCGGTTCACTCTGGGGCACAGAAAAGTTTATTGGTCTCAATTAGCAGCCCCATTAAGAGGAAAATTAGAGTCTTAATGAGCTTCCTCTGATTAGCAAATAACAGGTTTCCCAGCCTCTGGGCATCAGAGGTATGGGGTGAAAAACTCCTTCCCCTGTGGATGTCAGAGACCGCTCCAGCCCCCATCCTGGGTTCAAAGGCTTATGAGTGATGAGTTTTTAATTACGCTCTTAAATTCACCTGCTTGCTTAGCTGTGCGCTTAAGATCTGGAGTGAGAATCAGGCCTGCAGGGGAAGGGGGCCACAGCAAGAACCCGTGCCCAGAAAAATGGGGTGGGAGGACACTGAAGTTCACACAAGGAGGAATGGGGCGGGGCAGGGTGGGAGTGAGGTTCAGGGGGAATAAAGCAAAGTGCAAAATCAGCTCCCAGTGTGCGCTCATCGCTGTCTTCCCCCGCAG
Seq C2 exon
GGTCCCTGGAACACTGCAGTCCTGAGCTCTGGGATGGAGCCCGAGACTGCGCTGTGGGGCCCGGATCTGCAGGGTCCGGAACAGAGCCCCAACGATGCTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102870-ZNF629:NM_001080417:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)