MmuINT1035665 @ mm10
Intron Retention
Gene
ENSMUSG00000045639 | Zfp629
Description
zinc finger protein 629 [Source:MGI Symbol;Acc:MGI:2444524]
Coordinates
chr7:127612667-127615272:-
Coord C1 exon
chr7:127615083-127615272
Coord A exon
chr7:127612774-127615082
Coord C2 exon
chr7:127612667-127612773
Length
2309 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TACCCATCTCTCCCCACCAGAGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GAAGCTGGGGTCACTTCCTGCTCCGTCCCAGTCACCCTGAACTGGTCCCCGGGTCCTCAGCCTGGAATCACCCCTTGAGAAGGACCCTAGAGTTCCCGGCATCTAGCCCGTCCCCCGAGGCAGGGCACTTAAGGGGTTAAGTCCCCTGGGGCTGGCCTCTGCCTTTCGGCTTTTCCCAGACCCCAGAGCC
Seq A exon
GTGAGTTGGGGCCGCCTGGGTTCCCGGGGTGGCCTGGAGGCCCGGGACAGCCGCCGGGGAACAATAGGGCCAAGGAGGCGGCGACGGGCGAGGGGCGCAGGCCGGGCCCGGGGCGGCGGGGGACGGCGGCCGGGGGATTGTGAGAACCGCGCGGGGACCGCCGTGGGGGAGGGGAGGCGCGCGCGCCCAGAGAGCGAGTCCGGCCGGGGGCGGCGAGGCGGCCGCCGCTCTCCCGGAGCCGGGCAGCCTGGGCGTCCGCGGCGGGGAGGGAACGCCGGCGGCTCGCCTGGGCTTTGGGAGCCGGGGACAGGGTGGGTGCTCCCGGCCGGAGGCGCTCAAGTCTTGGTCCGCCGGGGTGCGGGGGGCGGCGTCGAGGGCGGTCCCGCTGCCTCCTGGTCAGGGTCACCCTGGGCCGCGCGCACCTCCGCGGGAAGGCAGCCGTCTCCGGCAGTCCTTCCCGCCTCGGTCCTCTGGGGGTCGTCCGGGGCAGGAGGCTGGCGCTCTTGGGCCTGGGCTGGTTCCCAGTAGTAGTCGCCTCGCAGTCTTTGCTACTTCTTGCATGTGGCCTGGTTATTAACTCTTTCCCTTCTACGGTAGGCCCTTGAGTTTTAAGTTTCTCTGTCCAAGTATCTAAGCTCCTACCTGTTCTCGGTCAGCTCAGCAGGGTAACCTTCTCCTCTCCGGGGGGCCCCCATCTCTCCCTAAAAACACTTAGAGATAGGGGATGGCTAACTCACTTCTCGGCTGCATTAGCAGTTGGTCAGCTGTCCATTGCTTCACCTGCTTCACACCCCAGCTACCTCTTGGTGAGCTTTGTCCTCTTTGTCCCTGTGCACAAAGTACCTATGCACACTGTCACCCCGAGGGTAGATTATTCCAGGGATTCCGTTAGATGTCAGCGCCCTCCTGCAGCCCTGTTCTCTCTCCTGGGGATCACCCCCGGGATTTTGAGTGACAGATATGACTCCTTCCCCTGGGGGCTCACTCTGACGAACTTATGTCACTTTTCTGACATCGATCTGCAAACTGATCTTAAAAGACACTGAACAAGATAGGCTGGCTTTCTGGGAGCATGAGGTGTCCAGCTCACTCAGTCCTCCAGCAGAGTTTTTACTGGGTACTTGTCCTAGGTGTGTGATGAAGCATCAACAAAAAGAATAAGGCAGAAGGATGGGTCCCCAGGTGTGTGTCTGGGTGGCTTTGGGGACATCCGTACCTAGAGCTCAGAGACGCAGCCTCTCAGACCTCCTCACTGGGTCTGACTTTTGCAGCCGAGGGAACTGGGCTTCCCTGCACTTTTCTGGCTCATTCTCGGGCTTCCGAGCTCTCCTCCTCTCCTGCCAGGAGACCACAAGTAGGAGTCTCATGTGACTGTCAAGGTCAACCCATGCCACAGGGCAAGCCAAACACAGAACGCGGAATTTGTGGTCTTAGCCCTGTTACTTCCCGCCTTGGGGCCTTGGAGACATTTCCCCCAGTGTCTACTTACTAATCTGTAAAATGGACAAATGACTCTTAAGTCTCTCAAGGCAGTGAAAGGAAGAAGACACCTGGTAGTCACCTATGCTCTCTACACACTTGCTTCCCTCCCCTCCTTGCTTGTCCTTTCTCCTTCATTTTGTTTGAGACAAGGTCTCGGGTAGCTGGGACTGACCTTGACCTTGACCTTCTGATCCTCTGGTTTCCATCTCCCAAGTATGCCACCGAGTCAGGCTCCCCTTTTCCTTGCCTTCGTCTCCTGTAGGAGCCCCTGACTTCAGACTCCCCTTCCCACCCATAGGCTATCCTCTGTGCTTGGAGAATGGCAAACTGCCCCCACTCTTTGTGAGTAGTTGTCCCTTCAGGGAAACTTTTTTTTTTAACCCCTTAAAAAGAGTCAGTCTCAGTTCTCTCTGGGGCTCATAAGGGAAAAGTTTATTGCTCTCAATTAGCAGTCCCATAAAGGAAGAAAATTGGAGTCTTAATGAGCTTCCTCTGATTTGCAAAATAACACGTTTCCAGGCCTCTGGGCATCAGATGTGTGGGGTGAAAGCCTGCCTCCCATCTGAATGTTGGATAGCGCTCCAGCCTTCAGTGCAGGTACAGAGGGTTATGACGATGGGGTTTCCATTGCCTCTCCATTCACCGACTTGCTTCATTGCAATCTGGAAGATTTGCAGTATTTGGAACCAGGCCTTTGAGACTAAGGGGCTCAGTGAGAAATGGTGTCGGAGAAGTGAGTGGCGGCAGGTCCCCGAGAGTCACACAAGTGGGAGCACAAAGAAAAGCACTAAACCTGGTCCCATTGTGTACCCATCTCTCCCCACCAG
Seq C2 exon
AGACCCTGGAACCTTCACAGTCTGCAGCCGTGGGATGGAGCCTGAGACGGTGCTGTGGGGCCCGGATCTGCAGGGTCCTGAAGAGAGCCAGAATGAGGCTCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045639:ENSMUST00000084564:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.996
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types