MmuINT0179669 @ mm9
Intron Retention
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:146003789-146008175:+
Coord C1 exon
chr5:146003789-146003893
Coord A exon
chr5:146003894-146004443
Coord C2 exon
chr5:146004444-146008175
Length
550 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTATTTATATTGTATTAGATG
3' ss Score
6.3
Exon sequences
Seq C1 exon
GATTTCCAATTTCGAAGCCTGATGGAATCTCTGAGCGGGAGCAAGATCTACAAGTCTTTGATCTGGAGTCTAAGAATAGAGAAGTCATAAGAGGTGACTGTTCAG
Seq A exon
GTGAGTAAGGCGGACTCTGTCAGAGGAATCAGTGCAAAAGTAATCTCCAGGGGTTGAGCCAAGCTCTGGCTGAGCTCATACTCAACACACAGAGCTTTGCCATTCTGGAGTGGAGACAGCGTCTGCCTGTCTCTACAGTTTAATTTCTTTCATACAAATTGTGCTAGGTCCTAATTCAAGTTACAGCACATCTGATAAATCCTGTGATGCACCTGATAAGTCTTGTAGCCAGAGCTCAGATGTGCTTCAACATAAGAAGGGTCATGCCAAAGCCAAGTCTTACAACCCATTTTTATGTTTGTTCCTTTGAAATATCTTACTGGCTGTTGTCTGTCTTGCTGAAATAGCCTGTTTCTATCTCCCCTTGATCCATTTCCATCCTTCCTTGCTCCTGTTGTGCCTTTACATCTGCTATTTTTTGTTTGGAAGTAAATAGAATTTGCTTATTTTTGAGGATAGTACATTATTTAGTTTTCCTCTTATTTTTATTTATATTTTTTTAAGCACAGGGTATAGATTACATTTGTATTTTTTATTTATATTGTATTAG
Seq C2 exon
ATGGAGAGACCAGAGAAGAAAACAAGCTGTTGATTCCTAAGCGGAAAATTTCAGAAGAAGTACATTCATACAAAGTGAGAGTAGGAAAATTCAAACAAGATATTGCTCAAGTTCCTGAAACCAGAGAGGTTTATAAGTCTGAGGACAGATTAGAAAGACTCCAGGAGATTCTAAGAAAATTTCTCTTTCTGGAGAGAGAGTTTAGACAAATAACAATCAGCAAGAAGACTTTCAGCAGTGAGAAGAACACTGAACCTGAAAAAAGCTTCAGTCTAGACTCCACACTTGATACAGATCAGAGAGTTCTTAGAATACAGACCACTGATGACAGTAAATATGACATGAACTTCAACCAGAACCCAGCAGTTGGTGAACAAGAACCAATAAATCTAACAGAGAATTTTCAGAGTACTGACTATAAGGAAAGCTTAATGGATCTGTCCCACCTTAATAAGTGGGAGAGCATGCCTACCACCGACAGATCCTATAAATGTGATACTTGTGGGAAAACCTTCCATCAGGCCTCAGCTCTTACTAGACATCAGAGAATTCACACAAGAGAGAAACCCTACAAATGTAAGGAATGTGAGAAATCTTTCAGTCAGAGCTCAAGTCTTAGTCGACACAAAAGAATACACACCAGAGAGAAATCCTACAAATGTGAAGCGTCTGATAAGTCCTGTGATGCACCTGATAAGTCTTGTAGCCAGAGCTCAGATGTGCTTCAACATAAGAAGGGTCATGCCAAAGCCAAGTCTTACAAGTGTGGAACCTGTGAAAGAGTCTTCAGCCGAAGTGTGCATCTTACTCAGCATCAGAGAACACATAAGGACATGTCCTGTAAATGTACCGTGTGTGGCAGTGACTTCTGCCACACCTCATACTTAGTTGAACATCAGAGACTACATCATCAAGAGAAGTCCTATGAATATGATGAATGTGGGCTGGCCTATGTTAAACAACAAGGAATTCGTTTCCAAGAAAAGCCCTACTCATGTAACGAATGTGGGAAAGACTTTAGATTGAATTCCCATCTTATTCAGCATCAAAGAATTCACACAGGAGAGAAACTGCATGAATGTAATGAGTGTGGGAAATCTTTCAGCCAAACCTCATGCCTTATTCAGCATCACAAAATGCACAGGAAAGAGAAATCATACGAATACAACAATTATGAGGAAAGTTTCAGTCACAGTTCTGATCTTACTCTGCAACAAGAAGTTCCCATTAGAGAGAGAGTCTTTGATTGTGATGCATGGGAAGAGAACTTCAGTCAGAGAGCACACCTCATCCAACATGAAAGGGTCCATACCAAAGAGAAACCTTATGAATGCAGTGAACTTGGGGAGACATTTAGTCAAGTTCAGGCCTCATTCAATATGTGAGAACTGAGACCAGGGAAAGTCACATATGTACTGAATGCTATGATGTCTTCAGTCATAGCTTATTCCGTGGTCGGCATCAGAGAATTGATAACCAGAGAGAAACCCGCTGAATGTGATGAACATTGGGAAGGTTTTTTATTTTTTCTTATTTTTGGTGTTAAATTCTTCATTGGTTCCTGTAAATCAGTGCTAGAATATATAGAATATGATACATTCTTCAGATTATTTTCATACCTTAGTCACAGTTGGGGAATTTGTACTGGAGTAAAATTCCACTGTCAAATGTGAAAAAGCCATCAGTCAACTACCTTGTTGGTTCAGTGTCAAATTTGTGCCATGCATAAAGCCTGTGAAGACATAGGTGTGTATGTGAGGAAACTCAAGTCATACCCCAGTGCTTGATCACATCGAGGAAACTATACCCAGAAATAGTCTATACCCAAGAAATTATTTGGATATAGTAAATGTGGCAGATCTGTGAGCAGGAGTCCATCTGTCATCAGAATGTACCAGATGTGAGTCTGATTGTTATGCAAATGCTAAGATCAAAACATCTGCACCAGATGAGACTGATATAATGCAAACGGTGAAATTTAACCACTCTATTTTCCAGGCCTTATCCAGTATCAAAGTATTAGAAAATGCTTACTTCTCTGTGTAATTATTACTATTTAGTCTCAGTCTTTTTTACTGCTGAATAACTGAATCCAGAAGATAATTGGGAAACGAAGTCATTTTCTCACAGTATCCTTTAATAAGTATTCTAAGAAGGTACAAGTATTTTATTATAGAACTCATTTGAGTGAATTTATTTTAATTTGGCCGATACACATTAAAACATTTTTCTTCTTTGAAATGGATTCTTATTCACAGTTTACCTAGAATGCTGTTAATGTGCCAGTGTTGACATAGCTTCTGGAGAGTAGCTCAATGAGCCTTCTCTGTTCTGGCCAGAGTACTCTCCAAAGGAGACTCAGGCCTATTCTTTTCTGAGGACCCTACAGACTATTGTTTCTATAGCCACACCCTTGGCTTCCTGTTGATTTCTGCGTTCTCTTAGGCATCCTTAAATGATGTTCTGGTGTTAGCTTCTCACCAGCTGATAAAGAGTTACTTCCACATCAGCCATCCATACGTTTGGAGGATTCAGTCTTCCTGAGTTTGTGGCAGGCACCCAAACATTTGCAAGTGATGTCCAAGTTTTTAGCTGCCTTGTTTGCATCCACAGCCCTCTAATGAGATGACAAGGACATCAGGGAGCCAGTAAGACTCCTGTTGGCCTAGCTACATTCATTCAGTGCCTACTTTGCATGTATGTGTATGTTTAGAATTCTTTTATATGCCTATATTGAAGGCCAACAAAATGCTCAGGTCTGCTTTTGATAGGGAAACAAAGAACACACAAATCAGAATAAGGATATACAGCCTTCCAATAAAGATATTGCTGTTAGTGATGTATCTAGACAGTATTTCAAGAGAGTGGCAGGTCCGTTCCTGGTAAAACCTTAATCATTAGGATTGCTTCTTTATCTGTTCCCTCCTCCACTCCCTTCATCAAGCCAGGGTAGTATTTTGAAGCATAAAGCTTTGTGCATAATTATTTGTGCATTGCCATACTTTTGTGTTGGGATGCAGTCTTTGTTGCCCAGGCTGGTCTTGAATTCCTGGGTTCACACAATTTCCTGCCTCCCAAATAGCTGGGATTATAGGCATGCGCTCCTGTGCCTGGATTTTATTTTTGTATTTTAATAGAATCTGCAGGCCATATAAAGGATCATGGCTCTTTTGATTTACAGAAGTGGTCACAGGTGTTGAGTCCAGGGTCCCTGCCCGATGCCACAGAGTTCATGATTTTTTACATGATGTGAAGCATTTTCATCTTAAAATTTGTAACATCTTGTGAATAAGAAAAGTGTTATTTCAAATTCTAGTTGTCAATCAAGCAGTTGAGGCTTTCATAGTTCAGATGTCATAATGTTCACTAGGGATCCTCAACCAGTATATAAAATATGCTGCTCACTGTAAATCTTGTGGCTGACCTCTAGGGTAGTCCCACCACTGTATTTTACTTCTTTGCCATCAGCAAGCGTAGTGTCTCATCAGGACAAGAAAATCAACATATATCAAATTGATCTAAATGTAAAAGCAAATGAAAAATGCATGGTTTTTTGTCCCTGTCGAACATGTATATTCTTACTTATAGAGACCAATAGTCACTTCCAGTGACTGAGGCAGAGGATTTGATTCATTCCTAAGTAGCAGAATCTGTAAAAACCCCACGTATGCATTTGGGTTTGGAACGTGCTTTTGTACTTCTACTTGAATAAAGGTGTGTTCAGTGCTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-Zfp655:NM_028298:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116123=T2SJ=WD(100=19.7),PF0062824=PHD=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF0009621=zf-C2H2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGATGGAATCTCTGAGCG
R:
TCAGGTTCAGTGTTCTTCTCACT
Band lengths:
348-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: