HsaINT0188017 @ hg19
Intron Retention
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99169311-99174076:+
Coord C1 exon
chr7:99169311-99169415
Coord A exon
chr7:99169416-99169867
Coord C2 exon
chr7:99169868-99174076
Length
452 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTATTTATATATTGTATCAGATG
3' ss Score
6.78
Exon sequences
Seq C1 exon
GATTTCCAATTTCCAAGCCTGATGGGATCTCCCAGCTGGAACAGGATCTACAGGTCTTTGATCTGGAAACTAAGACTAGAGAAGTCTTAAGAGATGACTGCTCAG
Seq A exon
GTGAGTAAGGCAGAATCAGATAGAATTAGTAGGGAAGTAAAGTTCAATTGTTGAGCCAAGTTGTAGCTGCTTTGGCACTCAGAATGAAGAGCTCTGTGTGTGTCCTAGCATGGAGAGTTCCTTCCTTTTCCCTTCAGTTAGGTTGACCCTTTCCATTTGTTTAGTATCCGTGCACATGTCGTACTAGACCCCAATCAAGTTGCTTATCTAAAATTCTTTCAGCTGTTTCCCTATTATTTCCTTACTCTGCTGAACATGTCCGCTGTTTTACCTCACTGCTCCTGTTTATGCCCTTAACTTCTGCTGTTGAGATTTTGTGCCTGTTTTTCAGAGTAAATAAACTTTTCTTGTCCTTGTAGATACTACATTGTTTAGTTTTCTCATCTGAGTTTTCTTTTCCTAAGCACAGGGTACAGATTACATTTGCATTTTCTATTTATATATTGTATCAG
Seq C2 exon
ATGGAGAGACCAGAGAAGAGAACAAGCTGTTGATTCCTAAGCAGAAAATTTCGGAAGAAGTGCATTCATACAAAGTGAGAGTAGGAAGACTCAAACACGATATTACCCAAGTTCCTGAGACTAGAGAAGTGTATAAGTCTGAGGACAGATTAGAAAGACTTCAGGAAATTCTAAGGAAATTTCTGTACCTGGAGAGAGAGTTTAGGCAAATAACAATCAGCAAGGAAACCTTCACCAGTGAGAAGAACAATGAATGTCATGAACCCGAAAAAAGCTTCAGTCTGGACTCTACTATTGATGCAGATCAGAGAGTTCTTAGAATACAGAATACCGATGACAATGATAAGTATGACATGAGCTTCAACCAGAATTCAGCCTCTGGTAAACATGAACACTTAAATCTAACAGAGGATTTTCAGAGTAGTGAATGTAAGGAAAGCTTAATGGATCTCTCCCACCTTAATAAATGGGAGAGCATCCCTAACACTGAGAAATCCTATAAATGTGATGTATGTGGGAAAATTTTCCATCAGAGCTCAGCCCTTACTAGACATCAGAGAATCCATACTAGAGAGAAGCCCTACAAATGTAAAGAATGTGAAAAGTCTTTCAGTCAGAGCTCAAGTCTTAGTCGACATAAAAGAATACACACTAGAGAAAAACCTTACAAATGTGAAGCATCTGATAAATCCTGTGAAGCGTCTGATAAATCCTGTAGTCCAAGCTCAGGCATAATTCAGCATAAGAAAATTCACACCAGAGCCAAATCTTACAAATGTAGCAGTTGTGAAAGAGTCTTCAGTCGTAGTGTCCACCTTACTCAACATCAGAAAATTCACAAAGAGATGCCCTGTAAGTGTACTGTATGTGGCAGTGACTTCTGCCATACTTCATACCTACTTGAACATCAGAGGGTCCATCATGAAGAGAAAGCCTATGAGTATGATGAATATGGGTTGGCCTATATTAAACAACAAGGAATTCATTTCAGAGAAAAGCCCTATACGTGTAGTGAATGTGGAAAAGACTTCAGATTGAATTCACATCTTATTCAGCATCAAAGAATTCACACAGGAGAGAAAGCACATGAATGTAATGAATGTGGAAAAGCTTTCAGTCAAACCTCATGCCTTATTCAGCATCACAAAATGCATAGGAAAGAGAAATCGTATGAATGTAATGAGTATGAGGGCAGTTTCAGTCATAGCTCAGATCTTATCCTGCAACAAGAAGTCCTCACCAGACAGAAAGCCTTTGATTGTGATGTATGGGAAAAGAACTCCAGTCAGAGAGCACATCTAGTTCAACATCAGAGCATTCATACCAAAGAGAACTCATGAATGTAATGAAGATGGGAAGATATTTATCAAATTCAGGCTTCATTCAGCATCTGAGAGTTCACACCAGGGAGAAATCATGTATGTACTGCATGTGGTAAAGCCTTCAGTCATAGCTCAGCCATTGCTCAGCATCAGATAATTCACACCAGAGAGAAACCCTCTGAATGTGACGAATGAAGAAAAGGTATTAGTGTTAAACTCTTAATCGACTCCTGCAAATCTATACCAGTGAGAAATCTTACAAATGTATTGAATGTGGCAAATTTTTCATGCTATTAGTATTTTCATACCTTAGTCACATTTGGAGAATTCACATGGGAATAAAATTCCATTGCTGCAATGAATGTGAAAAAGCCATCAGTCAAAGAAACTACCTTGTTTAGTATCAAATTCACGCCATGCAAAAAGATTATAAATGTAATAAGCATGTATGTGTGTGAGGAGATTCAGTCATAACCCAACGCTCATTCAACATCAAAGAATTTATACCTAAGAGAACTTATTTGGGTGTAGTAAATGGCAGATCTTTCAATAGGAGTTTAACTAGTCTTTGTCATATCAGAATATCCATAGTAGACAAGAATTTGATGTAACGCAAATGGAAAAACTCGACACCACATTTCAGGCTTTACCCAACATCGAAATAATGGAGAGAAAATTGTTGATTATTTGTTTATGAAATTGTTAATACATAGTCCCAATCTTTTTCATTGCACAAAAATCTAGGGTTGACTTGGTAAATGCAGTGACATTTTCTCATGGAGTTCCTTTATTTAATATGTATTCTAAGTAGGTACGTTTATTTTTACTTTTTTATTATAATTTTGATATTAAAAAGAACAGAGATGGGGTCTTGCTTTGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCGATCCTCCCACCTGTCCTCCCAAAGTGCTGGGGTTACAGGCGTGTGTCACTGTGCTGGGCCTATTTTATTTATAGAACTCATTTAAGCTGTTTTTATTTTAATATGCCCTATAAACATTTTTATATTTTTTGAAATTGGTTCTTAGTGTTCACAACTTCCATAAGATACTGCTAATGCACCAGTATTAAAACACATCGACGTAAGTAGCTCATTTAGCTTTTTCTGCTGTTCTTGGCCCAAGTTCTTTCCAAAACCAACTCTTAGGCCTGCTCTTTACTAGGGATCTTATGTCGTATTGCTTTACAGCCACAACACTTGGATTCCTGTTGATTAACTTCTCCATTCTCTTAAGCACCTTTAGAAGATTTAGAAGTTTCCTAGTTTTAAGTGTTTCACCAGCAAGTATTCCATACCTACTTGATGTTGCTGGTCTGGTGTCTTATTTCCTAAAGTGAAGCATCTTTTTTTAAAAAAGAATTTGATTGACAATATATCCAGTCCAATATAAGTATGAAGGATTCTCTCTCCTGAGATTGTAGCAGGCAGCCAAACATTTTCAAATGATGCCCAAGGTTTTAGCTGTCTTGTGTGCATCCACAGTCTGCGAAGAAGACATGATAAGGACATCAGGGAGCCAACAAGACTCCTAATAGCCTCACTACATTCATCCAGTGCCTATTCTGCATGCCTAAGCTTAGAGTTCTTTTATATACCTCTACGGCCAGCAAAATGCTCAGGTCTGCTCTTGGTAGGGTAAACATAAAGAAGATACACAGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACGAGGTCAGGCAGTCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAGTTAGCCGGGTGTGGTGGCACGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGCAGGACTCTCTCTCAAAAAAACACAAAAAAACAAAAACAAAAAACCATACACACACACACACACACACAAATCAGCATCATAAGGGAATGTAGCCTTCCAACAGAGATGATGCTGTTCGTATGTTAATCTCAGAGACAGTATTTCAAGAGAGTGGCAGGTCTGTTCCTGGTAAAATTTTAACCATTAGGATTGCAGATAAATGTTTGAATTCTGCTCCTCTCTCATCAATCCAGGACAGTATTTGAAGTGTGAGGGCTTTGTGTATAGTTGTTTATCCATTACCACATTTTTGTATTTTAATAGTCTACAGGCTATATAAAAGAACATGGCTTTTTGACTGATAAAAGTGATTACAGATGTTGGCTCAAGTTCAGGGCCACCATCATATACCTAACAAGAGTTCATGATTCTTTAGGTAATGTCAAAACATTTTGTATTTTTCCATCTTAAGCTTTATAACATTTTGTGAGTAAGACAAATGTTATTTAAAATTCTTGTTGTCAGTCCAGCAATTGAGGCTTTCATAGTTCAGTGTTATAATATTCAGTAGGGACCCTCAACAAATATATAAAAATATGTTGCTCACTCTATAATCCTCCTATGGCTAACCTCTAGGATAGTTCTGCCACTATATTTTACTTCTTTGCCATCAGCAAGAGTAGGATTTCATCAAGGCAAGGTAGGAATCTAAATGAAATTGATATATAAATGAATTGATCTAAATGTAAAAGCAAATGAAAAATGCATGTGTTTTTTCCTGTCAAACATGTATACCCTTATGTATAGAGACCAGTAGTCACGTATGGTGACTGAAACAGGATTATGTAATCCCTAAAAAGCAGAATATGTAAAAATCACATGTATGCGTTTGGTTTAGGAATGTGCTTTTGTACTTCCACTTGAATAAAGGTGTGTTTGGTATTCTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-ZNF655:NM_001083956:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116123=T2SJ=WD(100=21.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF0009621=zf-C2H2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATTTCCAAGCCTGATGGG
R:
TCACTGGTGAAGGTTTCCTTGC
Band lengths:
342-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)