MmuINT1035686 @ mm10
Intron Retention
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145242920-145247302:+
Coord C1 exon
chr5:145242920-145243024
Coord A exon
chr5:145243025-145243574
Coord C2 exon
chr5:145243575-145247302
Length
550 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTATTTATATTGTATTAGATG
3' ss Score
6.3
Exon sequences
Seq C1 exon
GATTTCCAATTTCGAAGCCTGATGGAATCTCTGAGCGGGAGCAAGATCTACAAGTCTTTGATCTGGAGTCTAAGAATAGAGAAGTCATAAGAGGTGACTGTTCAG
Seq A exon
GTGAGTAAGGCGGACTCTGTCAGAGGAATCAGTGCAAAAGTAATCTCCAGGGGTTGAGCCAAGCTCTGGCTGAGCTCATACTCAACACACAGAGCTTTGCCATTCTGGAGTGGAGACAGCGTCTGCCTGTCTCTACAGTTTAATTTCTTTCATACAAATTGTGCTAGGTCCTAATTCAAGTTACAGCACATCTGATAAATCCTGTGATGCACCTGATAAGTCTTGTAGCCAGAGCTCAGATGTGCTTCAACATAAGAAGGGTCATGCCAAAGCCAAGTCTTACAACCCATTTTTATGTTTGTTCCTTTGAAATATCTTACTGGCTGTTGTCTGTCTTGCTGAAATAGCCTGTTTCTATCTCCCCTTGATCCATTTCCATCCTTCCTTGCTCCTGTTGTGCCTTTACATCTGCTATTTTTTGTTTGGAAGTAAATAGAATTTGCTTATTTTTGAGGATAGTACATTATTTAGTTTTCCTCTTATTTTTATTTATATTTTTTTAAGCACAGGGTATAGATTACATTTGTATTTTTTATTTATATTGTATTAG
Seq C2 exon
ATGGAGAGACCAGAGAAGAAAACAAGCTGTTGATTCCTAAGCGGAAAATTTCAGAAGAAGTACATTCATACAAAGTGAGAGTAGGAAAATTCAAACAAGATATTGCTCAAGTTCCTGAAACCAGAGAGGTTTATAAGTCTGAGGACAGATTAGAAAGACTCCAGGAGATTCTAAGAAAATTTCTCTTTCTGGAGAGAGAGTTTAGACAAATAACAATCAGCAAGAAGACTTTCAGCAGTGAGAAGAACACTGAACCTGAAAAAAGCTTCAGTCTAGACTCCACACTTGATACAGATCAGAGAGTTCTTAGAATACAGACCACTGATGACAGTAAATATGACATGAACTTCAACCAGAACCCAGCAGTTGGTGAACAAGAACCAATAAATCTAACAGAGAATTTTCAGAGTACTGACTATAAGGAAAGCTTAATGGATCTGTCCCACCTTAATAAGTGGGAGAGCATGCCTACCACCGACAGATCCTATAAATGTGATACTTGTGGGAAAACCTTCCATCAGGCCTCAGCTCTTACTAGACATCAGAGAATTCACACAAGAGAGAAACCCTACAAATGTAAGGAATGTGAGAAATCTTTCAGTCAGAGCTCAAGTCTTAGTCGACACAAAAGAATACACACCAGAGAGAAATCCTACAAATGTGAAGCGTCTGATAAGTCCTGTGATGCACCTGATAAGTCTTGTAGCCAGAGCTCAGATGTGCTTCAACATAAGAAGGGTCATGCCAAAGCCAAGTCTTACAAGTGTGGAACCTGTGAAAGAGTCTTCAGCCGAAGTGTGCATCTTACTCAGCATCAGAGAACACATAAGGACATGTCCTGTAAATGTACCGTGTGTGGCAGTGACTTCTGCCACACCTCATACTTAGTTGAACATCAGAGACTACATCATCAAGAGAAGTCCTATGAATATGATGAATGTGGGCTGGCCTATGTTAAACAACAAGGAATTCGTTTCCAAGAAAAGCCCTACTCATGTAACGAATGTGGGAAAGACTTTAGATTGAATTCCCATCTTATTCAGCATCAAAGAATTCACACAGGAGAGAAACTGCATGAATGTAATGAGTGTGGGAAATCTTTCAGCCAAACCTCATGCCTTATTCAGCATCACAAAATGCACAGGAAAGAGAAATCATACGAATACAACAATTATGAGGAAAGTTTCAGTCACAGTTCTGATCTTACTCTGCAACAAGAAGTTCCCATTAGAGAGAGAGTCTTTGATTGTGATGCATGGGAAGAGAACTTCAGTCAGAGAGCACACCTCATCCAACATGAAAGGGTCCATACCAAAGAGAAACCTTATGAATGCAGTGAACTTGGGGAGACATTTAGTCAAGTTCAGGCCTCATTCAATATGTGAGAACTGAGACCAGGGAAAGTCACATATGTACTGAATGCTATGATGTCTTCAGTCATAGCTTATTCCGTGGTCGGCATCAGAGAATTGATAACCAGAGAGAAACCCGCTGAATGTGATGAACATTGGGAAGGTTTTTTATTTTTTCTTATTTTTGGTGTTAAATTCTTCATTGGTTCCTGTAAATCAGTGCTAGAATATATAGAATATGATACATTCTTCAGATTATTTTCATACCTTAGTCACAGTTGGGGAATTTGTACTGGAGTAAAATTCCACTGTCAAATGTGAAAAAGCCATCAGTCAACTACCTTGTTGGTTCAGTGTCAAATTTGTGCCATGCATAAAGCCTGTGAAGACATAGGTGTGTATGTGAGGAAACTCAAGTCATACCCCAGTGCTTGATCACATCGAGGAAACTATACCCAGAAATAGTCTATACCCAAGAAATTATTTGGATATAGTAAATGTGGCAGATCTGTGAGCAGGAGTCCATCTGTCATCAGAATGTACCAGATGTGAGTCTGATTGTTATGCAAATGCTAAGATCAAAACATCTGCACCAGATGAGACTGATATAATGCAAACGGTGAAATTTAACCACTCTATTTTCCAGGCCTTATCCAGTATCAAAGTATTAGAAAATGCTTACTTCTCTGTGTAATTATTACTATTTAGTCTCAGTCTTTTTTACTGCTGAATAACTGAATCCAGAAGATAATTGGGAAACGAAGTCATTTTCTCACAGTATCCTTTAATAAGTATTCTAAGAAGGTACAAGTATTTTATTATAGAACTCATTTGAGTGAATTTATTTTAATTTGGCCGATACACATTAAAACATTTTTCTTCTTTGAAATGGATTCTTATTCACAGTTTACCTAGAATGCTGTTAATGTGCCAGTGTTGACATAGCTTCTGGAGAGTAGCTCAATGAGCCTTCTCTGTTCTGGCCAGAGTACTCTCCAAAGGAGACTCAGGCCTATTCTTTTCTGAGGACCCTACAGACTATTGTTTCTATAGCCACACCCTTGGCTTCCTGTTGATTTCTGCGTTCTCTTAGGCATCCTTAAATGATGTTCTGGTGTTAGCTTCTCACCAGCTGATAAAGAGTTACTTCCACATCAGCCATCCATACGTTTGGAGGATTCAGTCTTCCTGAGTTTGTGGCAGGCACCCAAACATTTGCAAGTGATGTCCAAGTTTTTAGCTGCCTTGTTTGCATCCACAGCCCTCTAATGAGATGACAAGGACATCAGGGAGCCAGTAAGACTCCTGTTGGCCTAGCTACATTCATTCAGTGCCTACTTTGCATGTATGTGTATGTTTAGAATTCTTTTATATGCCTATATTGAAGGCCAACAAAATGCTCAGGTCTGCTTTTGATAGGGAAACAAAGAACACACAAATCAGAATAAGGATATACAGCCTTCCAATAAAGATATTGCTGTTAGTGATGTATCTAGACAGTATTTCAAGAGAGTGGCAGGTCCGTTCCTGGTAAAACCTTAATCATTAGGATTGCTTCTTTATCTGTTCCCTCCTCCACTCCCTTCATCAAGCCAGGGTAGTATTTTGAAGCATAAAGCTTTGTGCATAATTATTTGTGCATTGCCATACTTTTGTGTTGGGATGCAGTCTTTGTTGCCCAGGCTGGTCTTGAATTCCTGGGTTCACACAATTTCCTGCCTCCCAAATAGCTGGGATTATAGGCATGCGCTCCTGTGCCTGGATTTTATTTTTGTATTTTAATAGAATCTGCAGGCCATATAAAGGATCATGGCTCTTTTGATTTACAGAAGTGGTCACAGGTGTTGAGTCCAGGGTCCCTGCCCGATGCCACAGAGTTCATGATTTTTTACATGATGTGAAGCATTTTCATCTTAAAATTTGTAACATCTTGTGAATAAGAAAAGTGTTATTTCAAATTCTAGTTGTCAATCAAGCAGTTGAGGCTTTCATAGTTCAGATGTCATAATGTTCACTAGGGATCCTCAACCAGTATATAAAATATGCTGCTCACTGTAAATCTTGTGGCTGACCTCTAGGGTAGTCCCACCACTGTATTTTACTTCTTTGCCATCAGCAAGCGTAGTGTCTCATCAGGACAAGAAAATCAACATATATCAAATTGATCTAAATGTAAAAGCAAATGAAAAATGCATGGTTTTTTGTCCCTGTCGAACATGTATATTCTTACTTATAGAGACCAATAGTCACTTCCAGTGACTGAGGCAGAGGATTTGATTCATTCCTAAGTAGCAGAATCTGTAAAAACCCCACGTATGCATTTGGGTTTGGAACGTGCTTTTGTACTTCTACTTGAATAAAGGTGTGTTCAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812:ENSMUST00000167316:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF0009621=zf-C2H2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGATGGAATCTCTGAGCG
R:
TCAGGTTCAGTGTTCTTCTCACT
Band lengths:
348-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types