MmuINT0179683 @ mm10
Intron Retention
Gene
ENSMUSG00000079215 | Zfp664
Description
zinc finger protein 664 [Source:MGI Symbol;Acc:MGI:2442505]
Coordinates
chr5:124862691-124863508:+
Coord C1 exon
chr5:124862691-124862882
Coord A exon
chr5:124862883-124863353
Coord C2 exon
chr5:124863354-124863508
Length
471 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGT
5' ss Score
8.67
3' ss Seq
GTGTCGGGTTGTGTCTCCAGCAC
3' ss Score
6.49
Exon sequences
Seq C1 exon
CCACCACCCCCATCCTCCCGGAGGCGTCTGGGTGTGCGGAGCGCGCGCGCGCGGCTCGGAGACGCACCTGTGAGGTGTCTCCCTCGGAAGGAGAGAGAGAGGGCGGCCCGGGGTGGGCGCGCGCGGAGTCCGAGGCCTGGACGCGCTCCTCGGCCACGCTCGGGAGGGAGTTGGAGCGGCCGACCGGAGTCG
Seq A exon
GTGCGTTTGAGTCTCTCGGCTTTTCAGGCCGGGGCGTGGGGCCGACTAGCGGGCTGGGGCTGGGGGAGCGGAAGGCGGGCTGGTAGAGTCCCGGGGGGAAGCGGGGGAGTCAGGAAAAGGAAAACAACCCATCCTTCAACCGGGCCTGGGCCGCGGGCATGGCGAGGAGGGAAGGGAAGGTCAGCGCGGTGCCCGCTGCGGCGCAGGGCCCGGGTCGGGCGCGGGATGAGGCAGAAGAGGCCCCGCGGGAGCTGGACTCTCCCGGACCGGGGCCCCATTGTTGTCCGGGGCCGAGGCGGGCGGGAGAGCGGCAGCTCTGGGAGCCGAGGGCCGCGCCCTGGAGCGCATCCAGGCGGGTCCCGAGAGAGCGGTAATGGCCGCGCGAGCGGGCCCCAGGGGCCGGGGGCGGGGGCGGCGGAGGGTCGTAGAGCGGTCCCGCTGCAGGGCTCTTGTGTCGGGTTGTGTCTCCAG
Seq C2 exon
CACTGCACGGTCCCCCGGCCGTGGCCGCTCAGCATCCCGCCCAGGTGATGAGGACCTCCCCGCGTCCCCAGCGCGCCAGGCTGCTGCTGTTGCTGCCGCTGCCGCCGGACGCCTCCATTGTCTGACCACCGCCAGGGCTCGGCTTTCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079215:ENSMUST00000111417:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACCCCCATCCTCCC
R:
CAGTGAAAGCCGAGCCCTG
Band lengths:
342-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types